Parental gene: | OSTC, ENSCAFG00000011286 |
| Aliases: | None |
| Description: | Canis lupus familiaris oligosaccharyltransferase complex subunit (OSTC), mRNA. [Source:RefSeq mRNA;Acc:NM_001160121] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 32:29017420..29028119(+) |
>ENSCAFG00000011286
ATGGAGACCTTGTACCGCGTCCCGTTCTTAGTGCTCGAATGCCCCAACCTGAAGCTGAAGAAGCCGCCCTGGGTGCACAT
GCCGTCGGCCATGACGGTGTACGCTCTGGTGGTGGTGTCTTACTTCCTCATCACCGGAGGAATAATTTATGATGTTATTG
TTGAACCTCCAAGTGTTGGTTCTATGACTGATGAACATGGACATCAGAGACCAGTAGCTTTCTTGGCCTACAGAGTAAAT
GGACAATATATTATGGAAGGACTTGCATCCAGCTTCCTGTTTACAATGGGGGGTCTAGGTTTCATAATCCTGGACCGATC
GAATGCACCAAACATTCCAAAACTCAATAGATTTCTTCTTCTATTCATTGGATTCGTCTGTGTCCTATTGAGTTTTTTCA
TGGCTAGAGTATTCATGAGAATGAAACTGCCGGGCTACCTGATGGGTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 7 .06 RPM |
| SRP017611_brain | 3 .33 RPM |
| SRP017611_kidney | 12 .68 RPM |
| SRP017611_liver | 2 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001753 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000016002 | possible_ortholog | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000024467 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000003717 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026873 | possible_ortholog | 6 retrogenes | |
| Monodelphis domestica | ENSMODG00000020599 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000008869 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000041084 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000011056 | possible_ortholog | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000005915 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000023322 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000009145 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000021644 | ortholog_one2one | 6 retrogenes | |
| Tarsius syrichta | ENSTSYG00000000724 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_263 | 97.33 | 100.00 | Please wait, loading  |
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| 2. | retro_cfam_296 | 98.65 | 98.66 | Please wait, loading |
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| 3. | retro_cfam_814 | 97.32 | 100.00 | Please wait, loading |
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| 4. | retro_cfam_1129 | 94.70 | 100.00 | Please wait, loading |
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| 5. | retro_cfam_1206 | 99.33 | 100.00 | Please wait, loading |
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| 6. | retro_cfam_1459 | 97.99 | 99.33 | Please wait, loading |
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| 7. | retro_cfam_1462 | 73.77 | 79.87 | Please wait, loading |
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| 8. | retro_cfam_1575 | 72.97 | 97.32 | Please wait, loading |
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| 9. | retro_cfam_1851 | 100.00 | 100.00 | Please wait, loading |
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| 10. | retro_cfam_1910 | 89.33 | 100.00 | Please wait, loading |
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| 11. | retro_cfam_1948 | 87.42 | 100.00 | Please wait, loading |
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| 12. | retro_cfam_2003 | 95.30 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000011286 retrocopies