Parental gene:

ENSCPOG00000008581

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:7909372..7912646(+)


>ENSCPOG00000008581
GCTGCAGGTGTGGACAGAAGAGCAAAGCATGAAACCCAGCGTTTGCTGGCAGAGCCGGTTCCTGGGATTAAAGCAGAACC
AGACGAGAGCAACGCCCGTTATTTTCACGTGGTCATTGCTGGTCCCCAGGATTCCCCCTTTGAAGGAGGGACTTTTAAAC
TTGAACTATTTCTGCCAGAAGAATACCCAATGGCAGCACCTAAAGTACGTTTCATGACCAAAATTTATCATCCTAATGTA
GACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAATGGTCGCCAGCACTGCAGATCCGCACAGTTCTGCTATC
GATCCAGGCTTTGTTAAGTGCTCCTAATCCAGATGACCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAG
CCCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAA

Library Parental gene expression (RPM)
SRP017611_brain 20 .82 RPM
SRP017611_kidney 12 .98 RPM
SRP017611_liver 8 .88 RPM
SRP040447_lung 17 .43 RPM
SRP040447_skeletal_muscle 16 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009833 ortholog_one2one 1 retrogene
retro_amel_507,
Bos taurus ENSBTAG00000021767 possible_ortholog 2 retrogenes
retro_btau_1173, retro_btau_1614,
Canis familiaris ENSCAFG00000006177 possible_ortholog 1 retrogene
retro_cfam_196,
Callithrix jacchus ENSCJAG00000002979 possible_ortholog 8 retrogenes
retro_cjac_141, retro_cjac_2121, retro_cjac_3142, retro_cjac_3148, retro_cjac_3216, retro_cjac_3241, retro_cjac_3329, retro_cjac_425,
Dasypus novemcinctus ENSDNOG00000018952 possible_ortholog 9 retrogenes
retro_dnov_1002, retro_dnov_1066, retro_dnov_1107, retro_dnov_1185, retro_dnov_1487, retro_dnov_1977, retro_dnov_2598, retro_dnov_277, retro_dnov_492,
Echinops telfairi ENSETEG00000001882 possible_ortholog 5 retrogenes
retro_etel_1008, retro_etel_1417, retro_etel_1593, retro_etel_1661, retro_etel_2136,
Felis catus ENSFCAG00000004260 ortholog_one2one 2 retrogenes
retro_fcat_1477, retro_fcat_1598,
Homo sapiens ENSG00000177889 possible_ortholog 3 retrogenes
retro_hsap_1392, retro_hsap_17, retro_hsap_3124,
Gorilla gorilla ENSGGOG00000024332 possible_ortholog 4 retrogenes
retro_ggor_1079, retro_ggor_2140, retro_ggor_2720, retro_ggor_2969,
Loxodonta africana ENSLAFG00000028985 possible_ortholog 1 retrogene
retro_lafr_57,
Macropus eugenii ENSMEUG00000002944 possible_ortholog 7 retrogenes
retro_meug_1236, retro_meug_1287, retro_meug_1453, retro_meug_1473, retro_meug_162, retro_meug_2009, retro_meug_31,
Microcebus murinus ENSMICG00000014081 possible_ortholog 4 retrogenes
retro_mmur_1351, retro_mmur_220, retro_mmur_267, retro_mmur_611,
Myotis lucifugus ENSMLUG00000009982 ortholog_one2one 2 retrogenes
retro_mluc_2166, retro_mluc_453,
Macaca mulatta ENSMMUG00000020634 ortholog_one2one 3 retrogenes
retro_mmul_1587, retro_mmul_234, retro_mmul_72,
Monodelphis domestica ENSMODG00000009451 possible_ortholog 2 retrogenes
retro_mdom_133, retro_mdom_1485,
Mus musculus ENSMUSG00000074781 possible_ortholog 6 retrogenes
retro_mmus_1031, retro_mmus_2656, retro_mmus_3031, retro_mmus_3294, retro_mmus_3510, retro_mmus_524,
Nomascus leucogenys ENSNLEG00000005695 possible_ortholog 2 retrogenes
retro_nleu_1078, retro_nleu_2279,
Oryctolagus cuniculus ENSOCUG00000011287 ortholog_one2one 1 retrogene
retro_ocun_100,
Otolemur garnettii ENSOGAG00000034461 ortholog_one2one 7 retrogenes
retro_ogar_1502, retro_ogar_2178, retro_ogar_406, retro_ogar_408, retro_ogar_566, retro_ogar_584, retro_ogar_732,
Pongo abelii ENSPPYG00000004832 possible_ortholog 4 retrogenes
retro_pabe_113, retro_pabe_1152, retro_pabe_2580, retro_pabe_3326,
Pan troglodytes ENSPTRG00000005297 possible_ortholog 3 retrogenes
retro_ptro_2112, retro_ptro_3253, retro_ptro_956,
Pteropus vampyrus ENSPVAG00000013734 possible_ortholog 2 retrogenes
retro_pvam_1420, retro_pvam_358,
Sorex araneus ENSSARG00000005945 ortholog_one2one 3 retrogenes
retro_sara_174, retro_sara_438, retro_sara_695,
Sarcophilus harrisii ENSSHAG00000007776 possible_ortholog 1 retrogene
retro_shar_105,
Sus scrofa ENSSSCG00000000908 possible_ortholog 4 retrogenes
retro_sscr_101, retro_sscr_369, retro_sscr_698, retro_sscr_699,
Tupaia belangeri ENSTBEG00000012497 possible_ortholog 10 retrogenes
retro_tbel_108, retro_tbel_1208, retro_tbel_1235, retro_tbel_1727, retro_tbel_2393, retro_tbel_2732, retro_tbel_275, retro_tbel_3151, retro_tbel_4655, retro_tbel_849,
Tarsius syrichta ENSTSYG00000008800 ortholog_one2one 5 retrogenes
retro_tsyr_1476, retro_tsyr_1754, retro_tsyr_207, retro_tsyr_348, retro_tsyr_5,
Tursiops truncatus ENSTTRG00000003311 possible_ortholog 3 retrogenes
retro_ttru_1235, retro_ttru_286, retro_ttru_702,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_24 73.33 98.68
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2. retro_cpor_230 74.66 93.42
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3. retro_cpor_655 81.48 69.74
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4. retro_cpor_750 93.38 99.34
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5. retro_cpor_1548 91.72 95.39
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Download FASTA sequences of all ENSCPOG00000008581 retrocopies