Parental gene:

ENSDNOG00000018952

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_5901:134036..175956(-)


>ENSDNOG00000018952
ATGGCCGGGCTGCCCCGCAGGATTATCAAGGAAACCCAGCGTTTACTGGCAGAACCAGTTCCCGGTATTAAAGCAGAACC
AGATGAGAGCAACGCCCGTTATTTTCATGTGGTCATTGCTGGCCCCCAAGATTCCCCCTTTGAGGGAGGGACTTTTAAAC
TTGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCCCCTAAAGTACGTTTCATGACCAAAATTTATCACCCTAATGTA
GACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATTCGCACAGTTCTGCTATC
GATCCAGGCTTTGTTAAGTGCTCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAG
CCCAAGCCATAGAAACAGCTAGAGCATGGTCTAGGCCATATGCCATGAATAATATTTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 31 .70 RPM
SRP012922_cerebellum 50 .73 RPM
SRP012922_heart 23 .20 RPM
SRP012922_kidney 24 .92 RPM
SRP012922_liver 15 .79 RPM
SRP012922_lung 25 .81 RPM
SRP012922_quadricep_muscle 26 .48 RPM
SRP012922_spleen 30 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006177 possible_ortholog 1 retrogene
retro_cfam_196,
Callithrix jacchus ENSCJAG00000002979 possible_ortholog 8 retrogenes
retro_cjac_141, retro_cjac_2121, retro_cjac_3142, retro_cjac_3148, retro_cjac_3216, retro_cjac_3241, retro_cjac_3329, retro_cjac_425,
Cavia porcellus ENSCPOG00000008581 possible_ortholog 5 retrogenes
retro_cpor_1548, retro_cpor_230, retro_cpor_24, retro_cpor_655, retro_cpor_750,
Echinops telfairi ENSETEG00000001882 possible_ortholog 5 retrogenes
retro_etel_1008, retro_etel_1417, retro_etel_1593, retro_etel_1661, retro_etel_2136,
Homo sapiens ENSG00000177889 possible_ortholog 3 retrogenes
retro_hsap_1392, retro_hsap_17, retro_hsap_3124,
Loxodonta africana ENSLAFG00000028985 possible_ortholog 1 retrogene
retro_lafr_57,
Macropus eugenii ENSMEUG00000002944 possible_ortholog 7 retrogenes
retro_meug_1236, retro_meug_1287, retro_meug_1453, retro_meug_1473, retro_meug_162, retro_meug_2009, retro_meug_31,
Microcebus murinus ENSMICG00000014081 ortholog_one2one 4 retrogenes
retro_mmur_1351, retro_mmur_220, retro_mmur_267, retro_mmur_611,
Macaca mulatta ENSMMUG00000020634 possible_ortholog 3 retrogenes
retro_mmul_1587, retro_mmul_234, retro_mmul_72,
Monodelphis domestica ENSMODG00000009451 possible_ortholog 2 retrogenes
retro_mdom_133, retro_mdom_1485,
Oryctolagus cuniculus ENSOCUG00000011287 possible_ortholog 1 retrogene
retro_ocun_100,
Pongo abelii ENSPPYG00000004832 possible_ortholog 4 retrogenes
retro_pabe_113, retro_pabe_1152, retro_pabe_2580, retro_pabe_3326,
Pan troglodytes ENSPTRG00000005297 possible_ortholog 3 retrogenes
retro_ptro_2112, retro_ptro_3253, retro_ptro_956,
Sarcophilus harrisii ENSSHAG00000007776 possible_ortholog 1 retrogene
retro_shar_105,
Tarsius syrichta ENSTSYG00000008800 possible_ortholog 5 retrogenes
retro_tsyr_1476, retro_tsyr_1754, retro_tsyr_207, retro_tsyr_348, retro_tsyr_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_277 72.55 100.00
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2. retro_dnov_492 75.48 99.34
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3. retro_dnov_1002 81.55 67.76
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4. retro_dnov_1066 71.05 100.00
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5. retro_dnov_1107 82.76 75.00
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6. retro_dnov_1185 78.00 96.05
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7. retro_dnov_1487 96.71 100.00
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8. retro_dnov_1977 81.82 79.61
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9. retro_dnov_2598 72.37 99.34
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Download FASTA sequences of all ENSDNOG00000018952 retrocopies