Parental gene:

ENSCPOG00000005260

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_40:15550774..15566155(+)


>ENSCPOG00000005260
ATGTTGCCAGCTGCAATGAGCTTCCTCAAAAGTTTTCCGCCACCTGGGTCGACTGAGGGGCTCCGGCACCAGCAGCCAGA
TACCGAGGCTGTGCTGAATGGAAACGGCCTCGGCACTGGCACCCTTTACATCTCTGAGAGCCGCCTGTCTTGGTTAGATG
GTTCCGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCTGTGTCCAGGGACCTAAATGCCTATCCACGA
GAACATTTGTATGTTATGGTGAATTCTAAATTTGGAGAAGAAATAAAAGACTCTCTTGATGAAGAAGAAGAAGACAGTGA
TGATGATGTTGAACCTATTACTGAATTTAGATTTGTGCCTACTGATAAATCAGCGTTGGAGGCAATGTTCACTGCAATGT
GTGAATGCCAAGCCTTGCATCCAGATCCTGAGGATGAAGACTCAGATGATTATGATGGAGAAGAGTACGATGTGGAAGCT
CATGAACAAGGACAGGGGGATATCCCCACATTTTACACCTATGAAGAAGGATTATCCCATTTAACAGCAGAAGGGCAGGC
CACACTGGAGAGATTAGAAGGAATGCTTTCCCAGTCTGTGAGCAGCCAGTATAACATGGCTGGGGTACGGACAGAAGATT
CAGTAAGAGATTATGAAGGTTCAGATGGCATGGAAGTAGATACTGCACCAACAGTTGCAGGACAGTTTGAGGACGCAGAT
GTTGATCACTGA

Library Parental gene expression (RPM)
SRP017611_brain 4 .72 RPM
SRP017611_kidney 4 .08 RPM
SRP017611_liver 2 .74 RPM
SRP040447_lung 7 .21 RPM
SRP040447_skeletal_muscle 7 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019930 ortholog_one2many 1 retrogene
retro_btau_376,
Canis familiaris ENSCAFG00000004900 possible_ortholog 6 retrogenes
retro_cfam_1112, retro_cfam_1448, retro_cfam_255, retro_cfam_327, retro_cfam_720, retro_cfam_727,
Choloepus hoffmanni ENSCHOG00000007254 possible_ortholog 1 retrogene
retro_chof_1685,
Callithrix jacchus ENSCJAG00000014927 ortholog_one2many 1 retrogene
retro_cjac_4085,
Dasypus novemcinctus ENSDNOG00000008188 possible_ortholog 1 retrogene
retro_dnov_477,
Felis catus ENSFCAG00000026321 possible_ortholog 1 retrogene
retro_fcat_736,
Homo sapiens ENSG00000074201 ortholog_one2many 2 retrogenes
retro_hsap_3010, retro_hsap_3595,
Gorilla gorilla ENSGGOG00000003091 ortholog_one2many 1 retrogene
retro_ggor_2084,
Macropus eugenii ENSMEUG00000005935 ortholog_one2many 4 retrogenes
retro_meug_1825, retro_meug_2097, retro_meug_783, retro_meug_929,
Myotis lucifugus ENSMLUG00000024623 possible_ortholog 2 retrogenes
retro_mluc_1501, retro_mluc_1507,
Mustela putorius furo ENSMPUG00000015944 possible_ortholog 1 retrogene
retro_mputfur_435,
Mus musculus ENSMUSG00000025439 ortholog_one2many 1 retrogene
retro_mmus_1984,
Nomascus leucogenys ENSNLEG00000016699 ortholog_one2many 2 retrogenes
retro_nleu_300, retro_nleu_756,
Oryctolagus cuniculus ENSOCUG00000024393 ortholog_many2many 1 retrogene
retro_ocun_1303,
Pongo abelii ENSPPYG00000003712 ortholog_one2many 1 retrogene
retro_pabe_2494,
Sorex araneus ENSSARG00000009460 ortholog_one2many 2 retrogenes
retro_sara_247, retro_sara_682,
Ictidomys tridecemlineatus ENSSTOG00000027980 ortholog_one2many 3 retrogenes
retro_itri_239, retro_itri_319, retro_itri_490,
Tupaia belangeri ENSTBEG00000001316 possible_ortholog 1 retrogene
retro_tbel_2975,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_67 98.74 97.94
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Download FASTA sequences of all ENSCPOG00000005260 retrocopies