Parental gene:

ENSCPOG00000003565

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:12596272..12609567(+)


>ENSCPOG00000003565
ATGGGAGGCTTGGAGAAGAAGAAGTATGAACGAGGCTCTGCCACCAACTACATCACCCGAAACAAAGCCCGCAAGAAGCT
GCAGCTGAGCCTGGCAGACTTCAGGCGACTGTGCATCCTGAAGGGCATTTATCCCCATGAACCCAAACATAAGAAGAAAG
TTAACAAGGGCTCCACAGCACCCCGAACTTTTTATCTCATTAAAGACATCAAGTTTCTCCTCCATGAACCCATTGTTAAC
AAATTTCGGGAATACAAGGTGTTTGTTCGGAAGCTCCGGAAGGCCTATGGGAAAAGCGAGTGGAACACTGTGGAGCGTCT
GAAGGACAATAAGCCTAACTACAAACTTGACCATATCATCAAGGAGCGGTACCCTACATTCATCGATGCTCTGCGGGACC
TGGATGACGCCCTGTCCATGTGCTTCCTCTTTTCCACCTTCCCACGGACAGGCAAGTGCCATGTGCAGACCATCCACCTG
TGCCGCCGGCTTACTGTGGAGTTTCTGCATTACATCATTGCTGCCCGTGCCCTGAGAAAGGTCTTCCTGTCCATCAAAGG
CATTTACTACCAGGCCGAGGTGCTGGGGCAGCCCATTGTGTGGATCACACCCTATGCCTTCTCCCATGATCACCCGACAG
ATGTGGACTACAGGGTCATGGCCACTTTCACTGAGTTCTACACCACCTTACTGGGCTTTGTCAACTTCCGCCTCTACCAG
TCGCTCAACCTCCACTATCCACCAAAGCTCGAGAGTCAGGCCCAAACAGAAGTGAAGGCGAAGGAAGATACCTATGCATT
GGACTCTGAGAGCGCCATGGAGAAACTGGCGGCTCTCAGTGCCAGCCTGGCCCGTGTGGTGGTTCCCGCAGCAGAGGAGG
AAGCTGAGGCTGACGAGTTTCCTGCTGATGGCGAAATGGCAGTACAGGAAGAAAATCGCAGGAAAGAGCTGTTGGCTCAA
GAAAAACACAAGAAGCTCTTTGAAGGCCTAAAGTTCTTCCTGAACCGTGAGGTGCCCCGAGAGGCCCTGACCTTTATCAT
CAGAAGTTTCGGGGGGGACGTGTCCTGGGACAAATCTTTGTGCATTGGGGCCACCTATGATGTCACAGACCCCTGCATTA
CCCACCAGATTGTGGATCGGCCTGGACAGCAAACCCCTGTCATCGGCAGGTACTATGTGCAGCCCCAGTGGGTATTTGAC
TGTGTCAATGCCCGGCTCCTCCTCCCTGTGGCAGAGTACTTTCCAGGGGTGCAGCTACCCCCGCACCTTTCACCCTTCGT
GTCTGAGAAGGAAGGGGATTATATTCCACCAGAGAAGCTGAAGCTGCTGGCTCTTCAGCGAGGAGAGGATCCAGGAAACT
TGAAAGAGTCAGAAGAAGAAAACGAAGAAGATGACAAAGGTGATGGTGATGAAGAGGAGGAGAAAGTTGTAGAGGCTGAT
TTGGGGAAGAATGGAGAGGCCCACCTGGCAGCCCTGGAGGAACAGAGGATGGAGGAAAAGAAACCCAGAGTGATGGCAGG
CACTGTGAAGCTGGAAGACAAGCAACGGCTGGCTCAGGAGGAGGAGAGTGAGGCCAAGCGCCTGGCCATCATGATGATGA
AGAAGCGGGAGAAGTATCTTTACCAAAAGATCATGTTTGGCAAGAGGCGCAAAATCCGAGAGGCCAACAAACTGGCACAG
AAACGGAAAGCTCATGATGAGGCTCTGAGGTCTGAGAAGAAAGCAAAGAAGGCAAGACCTGTATGA

Library Parental gene expression (RPM)
SRP017611_brain 34 .22 RPM
SRP017611_kidney 46 .80 RPM
SRP017611_liver 30 .95 RPM
SRP040447_lung 56 .85 RPM
SRP040447_skeletal_muscle 25 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010617 possible_ortholog 1 retrogene
retro_cjac_3182,
Homo sapiens ENSG00000100029 possible_ortholog 1 retrogene
retro_hsap_4133,
Mus musculus ENSMUSG00000020430 ortholog_one2many 2 retrogenes
retro_mmus_1393, retro_mmus_3225,
Otolemur garnettii ENSOGAG00000005804 possible_ortholog 1 retrogene
retro_ogar_1719,
Pongo abelii ENSPPYG00000011716 possible_ortholog 1 retrogene
retro_pabe_3471,
Pan troglodytes ENSPTRG00000014251 possible_ortholog 2 retrogenes
retro_ptro_2018, retro_ptro_2809,
Rattus norvegicus ENSRNOG00000004515 ortholog_one2many 2 retrogenes
retro_rnor_2953, retro_rnor_824,
Tupaia belangeri ENSTBEG00000009825 possible_ortholog 1 retrogene
retro_tbel_1000,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_986 96.30 69.71
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Download FASTA sequences of all ENSCPOG00000003565 retrocopies