Parental gene:

PES1, ENSG00000100029

Aliases:PES1, PES
Description:pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:8848]
Organism:Human (Homo sapiens)
Coordinates:22:30972614..31003070(-)


>ENSG00000100029
ATGGGAGGCCTTGAGAAGAAGAAGTATGAACGAGGCTCGGCCACCAACTACATCACCCGGAACAAAGCCCGGAAGAAGCT
CCAGCTGAGCTTGGCTGACTTTAGGCGGCTGTGCATTCTGAAGGGCATTTATCCCCATGAACCCAAACACAAGAAGAAGG
TTAACAAGGGTTCTACAGCAGCCCGAACGTTTTACCTTATCAAAGACATCAGGTTTCTCCTCCACGAACCCATTGTCAAC
AAGTTCCGTGAATACAAGGTGTTCGTCCGGAAGCTCCGGAAGGCTTATGGGAAGAGCGAGTGGAACACTGTAGAGCGTTT
AAAGGACAATAAGCCCAACTACAAACTCGACCACATCATCAAGGAACGGTATCCCACGTTCATCGATGCCCTGCGGGACC
TGGACGATGCCCTCTCCATGTGCTTCCTGTTTTCCACCTTCCCGCGGACTGGCAAGTGCCACGTGCAGACCATTCAGCTG
TGCCGCCGGCTCACTGTGGAGTTCATGCACTACATTATCGCTGCCCGTGCCCTGCGCAAGGTCTTCCTGTCCATCAAAGG
CATTTACTACCAGGCCGAGGTACTGGGGCAGCCCATCGTGTGGATCACTCCCTATGCCTTCTCCCATGACCACCCGACAG
ACGTGGACTACAGGGTCATGGCCACCTTCACCGAGTTCTACACCACGCTGCTGGGCTTTGTCAACTTCCGCCTTTACCAG
TTGCTCAACCTCCACTATCCCCCGAAGCTCGAGGGTCAGGCCCAAGCAGAGGCAAAGGCCGGTGAGGGCACCTACGCGTT
GGACTCCGAGAGTTGTATGGAGAAACTGGCAGCCCTCAGTGCCAGCCTGGCCCGCGTGGTGGTGCCTGCCACAGAGGAGG
AGGCCGAGGTGGATGAGTTTCCCACCGATGGGGAGATGTCAGCGCAGGAGGAAGACCGCAGGAAGGAGCTGGAGGCGCAG
GAGAAGCACAAGAAGCTTTTTGAGGGCCTGAAGTTCTTCCTGAACCGAGAGGTGCCCCGTGAGGCCCTGGCCTTCATCAT
CAGGAGTTTTGGTGGGGAAGTGTCCTGGGACAAATCTTTGTGCATTGGGGCCACCTATGACGTCACAGACTCCCGCATCA
CCCATCAGATTGTCGACCGGCCTGGGCAGCAGACCTCAGTCATTGGCAGGTGCTACGTGCAGCCCCAGTGGGTGTTTGAC
TCAGTGAACGCCAGGCTCCTTCTCCCCGTGGCAGAGTACTTCTCTGGGGTGCAGCTGCCCCCACACCTTTCACCCTTTGT
GACCGAGAAGGAAGGAGATTACGTTCCACCTGAGAAGCTGAAGCTGCTGGCTCTGCAGCGGGGAGAGGACCCAGGAAACC
TGAATGAGTCAGAAGAGGAGGAGGAAGAGGACGACAACAACGAAGGTGATGGTGATGAAGAGGGAGAAAATGAGGAGGAG
GAGGAAGATGCAGAGGCTGGTTCAGAAAAGGAGGAAGAGGCCCGGCTGGCAGCCCTGGAAGAGCAGAGGATGGAGGGGAA
GAAGCCCAGGGTGATGGCAGGCACCTTGAAGCTGGAGGATAAGCAGCGGCTGGCCCAGGAGGAGGAGAGTGAGGCCAAGC
GCCTGGCCATTATGATGATGAAGAAGCGGGAGAAGTACCTGTACCAGAAGATCATGTTTGGCAAGAGGCGAAAAATCCGA
GAGGCCAACAAGCTGGCGGAGAAGCGGAAAGCCCACGATGAGGCGGTGAGGTCTGAGAAGAAGGCCAAGAAGGCAAGGCC
GGAGTGA

Library Parental gene expression (RPM)
bodymap2_adipose 38 .42 RPM
bodymap2_adrenal 56 .19 RPM
bodymap2_brain 19 .36 RPM
bodymap2_breast 28 .70 RPM
bodymap2_colon 33 .32 RPM
bodymap2_heart 10 .67 RPM
bodymap2_kidney 33 .48 RPM
bodymap2_liver 25 .18 RPM
bodymap2_lung 17 .11 RPM
bodymap2_lymph_node 21 .73 RPM
bodymap2_ovary 48 .58 RPM
bodymap2_prostate 32 .41 RPM
bodymap2_skeletal_muscle 48 .27 RPM
bodymap2_testis 47 .15 RPM
bodymap2_thyroid 58 .08 RPM
bodymap2_white_blood_cells 29 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010617 ortholog_one2one 1 retrogene
retro_cjac_3182,
Cavia porcellus ENSCPOG00000003565 possible_ortholog 1 retrogene
retro_cpor_986,
Otolemur garnettii ENSOGAG00000005804 ortholog_one2one 1 retrogene
retro_ogar_1719,
Pongo abelii ENSPPYG00000011716 ortholog_one2one 1 retrogene
retro_pabe_3471,
Pan troglodytes ENSPTRG00000014251 ortholog_one2one 2 retrogenes
retro_ptro_2018, retro_ptro_2809,
Rattus norvegicus ENSRNOG00000004515 possible_ortholog 2 retrogenes
retro_rnor_2953, retro_rnor_824,
Tupaia belangeri ENSTBEG00000009825 ortholog_one2one 1 retrogene
retro_tbel_1000,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4133 78.60 72.96
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Download FASTA sequences of all ENSG00000100029 retrocopies