Parental gene:

PES1, ENSPPYG00000011716

Aliases:None
Description:pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:8848]
Organism:Orangutan (Pongo abelii)
Coordinates:22:25526081..25541342(-)


>ENSPPYG00000011716
ATGGGAGGCCTTGAGAAGAAGAAGTATGAACGAGGCTCAGCCACCAACTACATCACCCGGAACAAAGCCCGGAAGAAGCT
CCAGCTGAGCTTGGCTGACTTTAGGCGGCTGTGCATTCTGAAGGGCATTTATCCCCATGAACCCAAACACAAGAAGAAGG
TTAACAAGGGTTCTACAGCAGCCCGAACGTTTTACCTTATCAAAGACATCAGGTTTCTCCTCCACGAACCCATCGTCAAC
AAGTTCCGGGAATACAAGGTGTTCGTCCGGAAGCTCCGGAAGGCTTATGGGAAGAGTGAATGGAACACTGTAGAGCGTTT
AAAGGACAATAAGCCCAACTACAAACTTGACCACATCATCAAGGAACGGTACCCCACGTTCATCGATGCCCTGCGGGACC
TAGACGATGCCCTCTCTATGTGCTTCCTCTTTTCCACCTTCCCACGGACTGGCAAGTGCCATGTGCAGACCATTCAGCTG
TGCCGCCGGCTCACTGTGGAGTTCATGCACTACATTATCGCTGCCCGTGCCCTGCGCAAGGTCTTCCTGTCCATCAAAGG
CGTTTACTACCAGGCCGAGGTACTGGGGCAGCCCATCGTCTGGATCACTCCCTATGCCTTCTCCCATGACCACCCGACAG
ACGTGGACTACAGGGTCATGGCCACCTTCACCGAGTTCTACACCACGCTGCTGGGCTTTGTCAACTTCCGCCTTTACCAG
TTGCTCAACCTCCATTACCCCCCGAAGCTCGAGGGTCAGGCCCAAGCAGAGGCAAAGGCCAGTGAGGGCATCTACGCATT
GGACTCCGAGAGCTCTATGGAGAAACTGGCGGCCCTCAGTGCCAGCCTGGCCCGCGTGGTGGTGCCTGCCACAGAGGAGG
AGGCCGAGGTGGATGAGTTTCCCACCGATGGGGAGATGTCAGCGCAGGAGGAAGACCGCAGGAAGGAGCTGGAGGCGCAG
GAGAATCACAAGAAGCTTTTTGAGGGCCTGAAGTTCTTCCTGAACCGAGAGGTGCCCCGTGAGGCCCTGGCCTTCATCAT
CAGGAGTTTTGGGGGAGAAGTGTCCTGGGACAAATCTTTGTGCATCGGGGCCACCTATGACGTCACAGACTCCCGCATCA
CCCACCAGATTGTCGACCGGCCTGGGCAGCAGACCTCAGTCATTGGCAGGTGCTACGTGCAGCCCCAGTGGGTGTTTGAC
TCGGTGAACGCCAGGCTCCTCCTCCCCGTGGCAGAGTACTTCCCTGGGGTGCAGCTGCCCCCACACCTTTCACCCTTTGT
GACCGAGAAGGAAGGAGATTACGTTCCACCTGAGAAGCTGAAGCTGCTGGCTCTGCAGCGGGGAGAGGACCCAGGAAACC
TGAATGAGTCAGAAGAGGAGGAGGAAGAGGACGACGACAACGAAAGTGATGGTGATGAAGTGGGAGAAAATGAGGAGGAG
GAGGAAGATGCAGAGGCTGGTTCAGAAAAGGAGGAAGAGGCCCGGCTGGCAGCCCTGGAAGAGCAGAGGATGGAGGGGAA
GAAGCCCAGGGTGATGGCAGGCACCTTGAAGCTGGAGGATAAGCAGCGGCTGGCCCAGGAGGAGGAGAGTGAGGCCAAGC
GCCTGGCCATTATGATGATGAAGAAGCGGGAGAAGTACCTGTACCAGAAAATCATGTTTGGCAAGAGGCGAAAAATCCGA
GAGGCCAACAAGCTGGCGGAGAAGCGGAAAGCCCACGATGAGGCGGTGAGGTCTGAGAAGAAGGCCAAGAAGGCAAGGCC
AGAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 43 .57 RPM
SRP007412_cerebellum 36 .12 RPM
SRP007412_heart 15 .92 RPM
SRP007412_kidney 70 .27 RPM
SRP007412_liver 43 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010617 ortholog_one2one 1 retrogene
retro_cjac_3182,
Cavia porcellus ENSCPOG00000003565 possible_ortholog 1 retrogene
retro_cpor_986,
Homo sapiens ENSG00000100029 ortholog_one2one 1 retrogene
retro_hsap_4133,
Otolemur garnettii ENSOGAG00000005804 ortholog_one2one 1 retrogene
retro_ogar_1719,
Pan troglodytes ENSPTRG00000014251 ortholog_one2one 2 retrogenes
retro_ptro_2018, retro_ptro_2809,
Rattus norvegicus ENSRNOG00000004515 possible_ortholog 2 retrogenes
retro_rnor_2953, retro_rnor_824,
Tupaia belangeri ENSTBEG00000009825 ortholog_one2one 1 retrogene
retro_tbel_1000,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3471 85.67 53.23
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Download FASTA sequences of all ENSPPYG00000011716 retrocopies