Parental gene:

NPM3, ENSCJAG00000017650

Aliases:None
Description:nucleophosmin/nucleoplasmin 3 [Source:HGNC Symbol;Acc:7931]
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:89092553..89094601(-)


>ENSCJAG00000017650
ATGGCCGCCGGCACTGCAGATGCCTTAGCGTTTTTGAGTCAGGAGAGCCGAACGCGGGCCGGGGGTCTCGGGAGCCCGCG
AGTCCCGGCCCCGGTCACTATGGACAGTTTTTTCTTCGGCTGTGAGCTCTCCGGCCACACCCGCTCCTTCACCTTTAAGG
TAGAGGAAGAGGATGATGCAGAGCACGTGCTGGCACTGACCATGCTCTGCCTCACCGAGGGAGCCAAAGATGAGTGTAAT
GTGGTAGAAGTTGTGGCCCGGAACCATGATCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACC
CATGCTCAGCCTGGATGATTTCCAGCTCCAACCACCTGTAACTTTCCGCCTGAAGTCGGGCTCTGGCCCTGTGCGGATCA
CTGGGCGGCATCAGATTGTTATGATGAGCAATGATGTTTCTGAGGAGGAGATCGAGGAAGAGGAAGAGGACAGTGAGGAG
GAGGAAGCTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGAGGGGCAGGCCCTAG

Library Parental gene expression (RPM)
SRP051959_colon 4 .06 RPM
SRP051959_heart 2 .58 RPM
SRP051959_kidney 3 .59 RPM
SRP051959_liver 1 .95 RPM
SRP051959_lung 3 .04 RPM
SRP051959_lymph_node 5 .59 RPM
SRP051959_skeletal_muscle 1 .86 RPM
SRP051959_spleen 4 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017639 ortholog_one2many 2 retrogenes
retro_amel_1233, retro_amel_90,
Bos taurus ENSBTAG00000016335 ortholog_one2one 1 retrogene
retro_btau_1164,
Canis familiaris ENSCAFG00000009919 ortholog_one2one 2 retrogenes
retro_cfam_1968, retro_cfam_2064,
Callithrix jacchus ENSCJAG00000019334 within_species_paralog 13 retrogenes
retro_cjac_1559, retro_cjac_1682, retro_cjac_1696, retro_cjac_1733, retro_cjac_2075, retro_cjac_2351, retro_cjac_2368, retro_cjac_2533, retro_cjac_2605, retro_cjac_3270, retro_cjac_3416, retro_cjac_4117, retro_cjac_838,
Cavia porcellus ENSCPOG00000006301 ortholog_one2one 1 retrogene
retro_cpor_1315,
Dasypus novemcinctus ENSDNOG00000018876 ortholog_one2one 1 retrogene
retro_dnov_1279,
Dipodomys ordii ENSDORG00000003491 ortholog_one2one 1 retrogene
retro_dord_577,
Felis catus ENSFCAG00000007178 ortholog_one2many 1 retrogene
retro_fcat_1906,
Homo sapiens ENSG00000107833 ortholog_one2one 1 retrogene
retro_hsap_792,
Macropus eugenii ENSMEUG00000003465 ortholog_one2many 2 retrogenes
retro_meug_20, retro_meug_25,
Microcebus murinus ENSMICG00000011739 ortholog_one2one 1 retrogene
retro_mmur_126,
Myotis lucifugus ENSMLUG00000004961 ortholog_one2one 1 retrogene
retro_mluc_2333,
Macaca mulatta ENSMMUG00000015774 ortholog_one2one 1 retrogene
retro_mmul_1072,
Mustela putorius furo ENSMPUG00000016894 ortholog_one2one 2 retrogenes
retro_mputfur_750, retro_mputfur_759,
Mus musculus ENSMUSG00000056209 ortholog_one2one 2 retrogenes
retro_mmus_2756, retro_mmus_3479,
Ochotona princeps ENSOPRG00000009229 ortholog_one2one 2 retrogenes
retro_opri_1019, retro_opri_92,
Pongo abelii ENSPPYG00000002589 ortholog_one2one 1 retrogene
retro_pabe_706,
Pan troglodytes ENSPTRG00000002875 ortholog_one2one 1 retrogene
retro_ptro_551,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2491 81.11 100.00
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2. retro_cjac_3052 79.33 100.00
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Download FASTA sequences of all ENSCJAG00000017650 retrocopies