Parental gene:

ENSCJAG00000017072

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:5417809..5419966(+)


>ENSCJAG00000017072
ATGGCTCTTCGGTATCCTATGGCCGTGGGCCTCAACAAGGGCCACAAGGTAACCAAGAACGTGAGCAAGCCTAGGCACAG
CCGCCGCCGCGGGCGTCTGACCAAACACACCAAGTTCGTGCGGGACATGATCCGGGAGGTGTGTGGCTTTGCCCCATACG
AGCGGCGTGCCATGGAGTTGCTGAAGGTCTCCAAGGACAAACGGGCCCTCAAGTTCATCAAGAAAAGGGTGGGAACACAC
ATCCGGGCCAAGAGGAAGCGGGAGGAGCTGAGCAATGTCCTGGCCGCCATGAGGAAAGCTGCTGCCAAAAAAGACTGA

Library Parental gene expression (RPM)
SRP051959_colon 48 .26 RPM
SRP051959_heart 45 .39 RPM
SRP051959_kidney 50 .67 RPM
SRP051959_liver 74 .06 RPM
SRP051959_lung 59 .08 RPM
SRP051959_lymph_node 96 .91 RPM
SRP051959_skeletal_muscle 67 .85 RPM
SRP051959_spleen 74 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012349 ortholog_one2many 6 retrogenes
retro_amel_1222, retro_amel_1581, retro_amel_1935, retro_amel_748, retro_amel_799, retro_amel_835,
Bos taurus ENSBTAG00000001794 possible_ortholog 3 retrogenes
retro_btau_139, retro_btau_238, retro_btau_81,
Cavia porcellus ENSCPOG00000022839 possible_ortholog 3 retrogenes
retro_cpor_1317, retro_cpor_1343, retro_cpor_857,
Dasypus novemcinctus ENSDNOG00000005163 ortholog_one2many 8 retrogenes
retro_dnov_19, retro_dnov_2160, retro_dnov_311, retro_dnov_313, retro_dnov_457, retro_dnov_578, retro_dnov_595, retro_dnov_631,
Echinops telfairi ENSETEG00000012943 possible_ortholog 15 retrogenes
retro_etel_1168, retro_etel_1199, retro_etel_1315, retro_etel_1336, retro_etel_139, retro_etel_1396, retro_etel_1425, retro_etel_1432, retro_etel_1528, retro_etel_2168, retro_etel_342, retro_etel_575, retro_etel_78, retro_etel_908, retro_etel_922,
Felis catus ENSFCAG00000011838 possible_ortholog 5 retrogenes
retro_fcat_1152, retro_fcat_1168, retro_fcat_1216, retro_fcat_406, retro_fcat_94,
Homo sapiens ENSG00000130255 possible_ortholog 13 retrogenes
retro_hsap_1059, retro_hsap_1440, retro_hsap_2000, retro_hsap_2434, retro_hsap_2577, retro_hsap_3051, retro_hsap_3248, retro_hsap_3769, retro_hsap_3892, retro_hsap_396, retro_hsap_4211, retro_hsap_4742, retro_hsap_534,
Gorilla gorilla ENSGGOG00000015365 possible_ortholog 11 retrogenes
retro_ggor_1514, retro_ggor_1613, retro_ggor_180, retro_ggor_2211, retro_ggor_2535, retro_ggor_2620, retro_ggor_34, retro_ggor_487, retro_ggor_60, retro_ggor_82, retro_ggor_885,
Latimeria chalumnae ENSLACG00000015161 ortholog_one2many 1 retrogene
retro_lcha_47,
Macropus eugenii ENSMEUG00000002743 ortholog_many2many 4 retrogenes
retro_meug_1318, retro_meug_176, retro_meug_261, retro_meug_283,
Monodelphis domestica ENSMODG00000001275 ortholog_many2many 2 retrogenes
retro_mdom_1353, retro_mdom_148,
Mustela putorius furo ENSMPUG00000006166 possible_ortholog 6 retrogenes
retro_mputfur_1423, retro_mputfur_150, retro_mputfur_1562, retro_mputfur_747, retro_mputfur_749, retro_mputfur_773,
Mus musculus ENSMUSG00000057863 possible_ortholog 9 retrogenes
retro_mmus_151, retro_mmus_1601, retro_mmus_1900, retro_mmus_1912, retro_mmus_193, retro_mmus_2864, retro_mmus_3379, retro_mmus_38, retro_mmus_652,
Nomascus leucogenys ENSNLEG00000013689 ortholog_one2one 15 retrogenes
retro_nleu_1132, retro_nleu_1244, retro_nleu_1415, retro_nleu_1645, retro_nleu_1699, retro_nleu_1788, retro_nleu_183, retro_nleu_1899, retro_nleu_2032, retro_nleu_2123, retro_nleu_242, retro_nleu_2451, retro_nleu_2503, retro_nleu_2835, retro_nleu_757,
Otolemur garnettii ENSOGAG00000027049 possible_ortholog 12 retrogenes
retro_ogar_1348, retro_ogar_18, retro_ogar_184, retro_ogar_2256, retro_ogar_2278, retro_ogar_2332, retro_ogar_2537, retro_ogar_2592, retro_ogar_3278, retro_ogar_358, retro_ogar_795, retro_ogar_888,
Pongo abelii ENSPPYG00000009431 possible_ortholog 12 retrogenes
retro_pabe_1194, retro_pabe_137, retro_pabe_1639, retro_pabe_1792, retro_pabe_1834, retro_pabe_1898, retro_pabe_216, retro_pabe_3081, retro_pabe_3173, retro_pabe_318, retro_pabe_3443, retro_pabe_3688,
Pan troglodytes ENSPTRG00000010338 ortholog_one2one 13 retrogenes
retro_ptro_1334, retro_ptro_1406, retro_ptro_1430, retro_ptro_1506, retro_ptro_1989, retro_ptro_2196, retro_ptro_2555, retro_ptro_2647, retro_ptro_2858, retro_ptro_3157, retro_ptro_399, retro_ptro_721, retro_ptro_982,
Rattus norvegicus ENSRNOG00000033473 possible_ortholog 5 retrogenes
retro_rnor_11, retro_rnor_17, retro_rnor_170, retro_rnor_369, retro_rnor_687,
Sarcophilus harrisii ENSSHAG00000013492 ortholog_one2many 8 retrogenes
retro_shar_185, retro_shar_347, retro_shar_543, retro_shar_557, retro_shar_592, retro_shar_615, retro_shar_716, retro_shar_819,
Sus scrofa ENSSSCG00000030010 possible_ortholog 2 retrogenes
retro_sscr_849, retro_sscr_960,
Ictidomys tridecemlineatus ENSSTOG00000020518 possible_ortholog 2 retrogenes
retro_itri_43, retro_itri_593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_52 79.61 98.10
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2. retro_cjac_280 79.05 100.00
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Download FASTA sequences of all ENSCJAG00000017072 retrocopies