Parental gene:

RPL36, ENSCPOG00000022839

Aliases:None
Description:60S ribosomal protein L36 [Source:UniProtKB/TrEMBL;Acc:H0WCA3]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_334:32855..33891(-)


>ENSCPOG00000022839
ATGGCCCTGCGCTACCCCATGGCCGTGGGCCTCAACAAGGGCCACAAGGTGACGAAGAACGTGAGCAAACCGAGGCACAG
TCGCCGCCGTGGGCGCCTCACCAAGCACACCAAGTTCGTGCGGGATATGATCCGGGAGGTGTGCGGCTTCGCGCCCTACG
AGCGGCGCGCCATGGAGCTGCTCAAGGTCTCCAAGGACAAGCGGGCGCTCAAGTTCATCAAGAAGAGGGTAGTGGGCACG
CACATCCGCGCCAAGAGGAAGCGCGAGGAGCTGAGCAACGTGCTGGCCGCCATGCGCAAGGCCGCCGCCAAGAAGGACTG
A

Library Parental gene expression (RPM)
SRP017611_brain 26 .52 RPM
SRP017611_kidney 76 .95 RPM
SRP017611_liver 29 .77 RPM
SRP040447_lung 134 .73 RPM
SRP040447_skeletal_muscle 135 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012349 ortholog_one2one 6 retrogenes
retro_amel_1222, retro_amel_1581, retro_amel_1935, retro_amel_748, retro_amel_799, retro_amel_835,
Bos taurus ENSBTAG00000001794 possible_ortholog 3 retrogenes
retro_btau_139, retro_btau_238, retro_btau_81,
Callithrix jacchus ENSCJAG00000017072 possible_ortholog 2 retrogenes
retro_cjac_280, retro_cjac_52,
Dasypus novemcinctus ENSDNOG00000005163 ortholog_one2one 8 retrogenes
retro_dnov_19, retro_dnov_2160, retro_dnov_311, retro_dnov_313, retro_dnov_457, retro_dnov_578, retro_dnov_595, retro_dnov_631,
Felis catus ENSFCAG00000011838 ortholog_one2one 5 retrogenes
retro_fcat_1152, retro_fcat_1168, retro_fcat_1216, retro_fcat_406, retro_fcat_94,
Gorilla gorilla ENSGGOG00000015365 possible_ortholog 11 retrogenes
retro_ggor_1514, retro_ggor_1613, retro_ggor_180, retro_ggor_2211, retro_ggor_2535, retro_ggor_2620, retro_ggor_34, retro_ggor_487, retro_ggor_60, retro_ggor_82, retro_ggor_885,
Latimeria chalumnae ENSLACG00000015161 ortholog_one2one 1 retrogene
retro_lcha_47,
Macropus eugenii ENSMEUG00000002743 ortholog_one2many 4 retrogenes
retro_meug_1318, retro_meug_176, retro_meug_261, retro_meug_283,
Monodelphis domestica ENSMODG00000001275 ortholog_one2many 2 retrogenes
retro_mdom_1353, retro_mdom_148,
Mustela putorius furo ENSMPUG00000006166 ortholog_one2one 6 retrogenes
retro_mputfur_1423, retro_mputfur_150, retro_mputfur_1562, retro_mputfur_747, retro_mputfur_749, retro_mputfur_773,
Mus musculus ENSMUSG00000057863 ortholog_one2one 9 retrogenes
retro_mmus_151, retro_mmus_1601, retro_mmus_1900, retro_mmus_1912, retro_mmus_193, retro_mmus_2864, retro_mmus_3379, retro_mmus_38, retro_mmus_652,
Otolemur garnettii ENSOGAG00000027049 ortholog_one2one 12 retrogenes
retro_ogar_1348, retro_ogar_18, retro_ogar_184, retro_ogar_2256, retro_ogar_2278, retro_ogar_2332, retro_ogar_2537, retro_ogar_2592, retro_ogar_3278, retro_ogar_358, retro_ogar_795, retro_ogar_888,
Pongo abelii ENSPPYG00000009431 ortholog_one2one 12 retrogenes
retro_pabe_1194, retro_pabe_137, retro_pabe_1639, retro_pabe_1792, retro_pabe_1834, retro_pabe_1898, retro_pabe_216, retro_pabe_3081, retro_pabe_3173, retro_pabe_318, retro_pabe_3443, retro_pabe_3688,
Rattus norvegicus ENSRNOG00000033473 possible_ortholog 5 retrogenes
retro_rnor_11, retro_rnor_17, retro_rnor_170, retro_rnor_369, retro_rnor_687,
Sarcophilus harrisii ENSSHAG00000013492 ortholog_one2one 8 retrogenes
retro_shar_185, retro_shar_347, retro_shar_543, retro_shar_557, retro_shar_592, retro_shar_615, retro_shar_716, retro_shar_819,
Sus scrofa ENSSSCG00000030010 ortholog_one2one 2 retrogenes
retro_sscr_849, retro_sscr_960,
Ictidomys tridecemlineatus ENSSTOG00000020518 possible_ortholog 2 retrogenes
retro_itri_43, retro_itri_593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_857 56.31 96.23
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_1317 60.95 99.06
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cpor_1343 63.55 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000022839 retrocopies