Parental gene:

ENSCJAG00000013611

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:148169493..148174488(+)


>ENSCJAG00000013611
ATGCGCGCCTGCGCGCCGCGACCTCCCTGCCCCCACTCCCCGGGGCTTCGGCCGCCAGGGGGCGAGAGCGGGCGGCACCA
GGGTCCGTGGAGCCGGGCGGGCAGGACGGAGAGGGCAAACAGGCTGCGGGATACCTGTTGGTGTTTGCGGCCGTGTGGTG
TGGAAAAAGTTAAGGGACACCCGGGGCGGCACTGCCTTTTAGATCACAGGTGGAGTCCCACCCCTGAGGTGTGGTCCGGA
CCCCGAACCGCTGCGAGGAGGCTGAGACTGGGTAGTTCCGTCGGCGGCAGGCCTTGGCGTGGGGCACGGCCAAGCATCAG
TCTGCGGCCCCTTGAACTGCGGGTCGGATTTGGGGGCTCGGGGCGCTTTGGCGTCTTCAGCGACCTGTCCTGGCCGGGGC
TTGCAGCTTGGGCTTTCCCAGGCTGGCGCGCTGGTGGGGCTCTCTCTGCGCGCAGGCTCCTTCTTCCTAACCTTATTTAT
TTCTGGAACATAACCTGTAGCCTTCCAAAACGGCTCGCAGGGCGGAGCTCCCTGCACTTGGAAGCAGTCTCAGGGCTCAT
CCACCCGGCCCGACGGGTTGGAGCTGTGGCGCCACATGGCCCTAGGAAGCGCCAGGGGGCAGTGGGAACCGCTGTAGCGG
GTCTTAAAGGATGGGAAACCCAATCACAGATGCCCCCGCGGGCCTTCCTTCCACTGGACTTGCAGGAGACATCCCGCAGG
GGTGTCAGGTTCTTCTCTACATGTCGCATGCGACTCTTGGGATGGACAGAGCAGCCTTATGGACCTGTAGAGCCTTTGCC
TGTCCTGGGTTGCTCAGAAGACTTACTGATTCCTTCTTCCCTTATGAAGGACTTGAAGGAGAAGAAGGAAGTTGTGGAAG
AGGCGGAAAATGGAAGAGACGCCCCTGCTAATGGGAATGCGGAGAATGAGGAAAATGGGGAGCAGGAGGCTGACAACGAG
GTGAGTACTGTCTCTTTCTCCGGTGGTACTATTTCCCGGTCTTGTCTGGCAGAAGGGGAAGGTGAGGAGGAGGATGGAGA
TGAAGATGAGGAAGCTGAGTCTGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGATGATGTCGATACCAAGAAGC
AGAAGACCGACGAGGATGATTAG

Library Parental gene expression (RPM)
SRP051959_colon 186 .73 RPM
SRP051959_heart 92 .81 RPM
SRP051959_kidney 143 .70 RPM
SRP051959_liver 61 .97 RPM
SRP051959_lung 170 .66 RPM
SRP051959_lymph_node 182 .60 RPM
SRP051959_skeletal_muscle 36 .60 RPM
SRP051959_spleen 178 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002549 possible_ortholog 2 retrogenes
retro_btau_1034, retro_btau_143,
Canis familiaris ENSCAFG00000032596 possible_ortholog 4 retrogenes
retro_cfam_113, retro_cfam_1570, retro_cfam_282, retro_cfam_78,
Felis catus ENSFCAG00000004780 possible_ortholog 1 retrogene
retro_fcat_1682,
Homo sapiens ENSG00000187514 possible_ortholog 6 retrogenes
retro_hsap_1863, retro_hsap_2690, retro_hsap_3447, retro_hsap_4198, retro_hsap_4288, retro_hsap_4787,
Gorilla gorilla ENSGGOG00000009874 possible_ortholog 4 retrogenes
retro_ggor_1551, retro_ggor_2149, retro_ggor_2981, retro_ggor_952,
Myotis lucifugus ENSMLUG00000002628 possible_ortholog 2 retrogenes
retro_mluc_131, retro_mluc_26,
Macaca mulatta ENSMMUG00000012140 possible_ortholog 1 retrogene
retro_mmul_196,
Mus musculus ENSMUSG00000026238 possible_ortholog 4 retrogenes
retro_mmus_3135, retro_mmus_3136, retro_mmus_414, retro_mmus_55,
Nomascus leucogenys ENSNLEG00000014135 possible_ortholog 2 retrogenes
retro_nleu_30, retro_nleu_96,
Rattus norvegicus ENSRNOG00000018584 possible_ortholog 1 retrogene
retro_rnor_69,
Sus scrofa ENSSSCG00000023690 possible_ortholog 1 retrogene
retro_sscr_895,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_421 66.99 91.89
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2. retro_cjac_647 80.73 98.20
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3. retro_cjac_1484 67.62 92.79
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4. retro_cjac_1976 89.13 81.98
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5. retro_cjac_2318 67.03 61.38
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6. retro_cjac_2507 78.57 60.36
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7. retro_cjac_2611 70.67 50.34
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8. retro_cjac_3035 88.51 60.00
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9. retro_cjac_3151 80.18 100.00
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Download FASTA sequences of all ENSCJAG00000013611 retrocopies