Parental gene: | PTMA, ENSG00000187514 |
| Aliases: | PTMA, TMSA |
| Description: | prothymosin, alpha [Source:HGNC Symbol;Acc:9623] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 2:232571604..232578251(+) |
>ENSG00000187514
ATGTCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGACTTAAAGGAGAAGAAGGAAGTTGTGGAAGAGGC
AGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTGAGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAG
ACGAAGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGAT
GAGGAAGCTGAGTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGATGACGATGTCGATACCAAGAAGCAGAAGAC
CGACGAGGATGACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 521 .70 RPM |
| bodymap2_adrenal | 745 .89 RPM |
| bodymap2_brain | 198 .00 RPM |
| bodymap2_breast | 297 .01 RPM |
| bodymap2_colon | 618 .53 RPM |
| bodymap2_heart | 69 .84 RPM |
| bodymap2_kidney | 297 .74 RPM |
| bodymap2_liver | 142 .33 RPM |
| bodymap2_lung | 665 .07 RPM |
| bodymap2_lymph_node | 567 .65 RPM |
| bodymap2_ovary | 481 .42 RPM |
| bodymap2_prostate | 527 .14 RPM |
| bodymap2_skeletal_muscle | 86 .08 RPM |
| bodymap2_testis | 324 .27 RPM |
| bodymap2_thyroid | 434 .32 RPM |
| bodymap2_white_blood_cells | 541 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000002549 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000032596 | ortholog_one2many | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013611 | possible_ortholog | 9 retrogenes | |
| Felis catus | ENSFCAG00000004780 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000009874 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000002628 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000012140 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000026238 | possible_ortholog | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000014135 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018584 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000023690 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1863 | 67.59 | 100.00 | Please wait, loading  |
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| 2. | retro_hsap_2690 | 89.83 | 55.14 | Please wait, loading |
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| 3. | retro_hsap_3447 | 78.89 | 65.44 | Please wait, loading |
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| 4. | retro_hsap_4198 | 90.00 | 56.07 | Please wait, loading |
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| 5. | retro_hsap_4288 | 72.73 | 100.00 | Please wait, loading |
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| 6. | retro_hsap_4787 | 79.09 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSG00000187514 retrocopies