Parental gene:

TAGLN2, ENSCJAG00000006156

Aliases:None
Description:transgelin 2 [Source:HGNC Symbol;Acc:11554]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:13477280..13485393(-)


>ENSCJAG00000006156
GTGTCCGCCTTTTCTTTGGCTTTGGCGTTGGTGAGCTCCCCACAGCCACCACCACCCATTGGAATGGCCAACAGGGGACC
TGCATATGGCCTGAGCCGGGAGGTGCAGCAGAAGATTGAAAAGCAATATGACGCAGACCTGGAGCAGATCCTGATCCAGT
GGATCACCACCCAGTGCCGAAAGGATGTGGGCCGGCCCCAGCCTGGGCGGGAGAACTTCCAGAACTGGCTCAAGGATGGC
ACGGTGCTATGTGAGCTCATTAATGCACTGTACCCCGAGGGGCAGGCCCCTGTAAAGAAGATCCAGGCCTCCGCCATGGC
CTTCAAGCAGATGGAGCAGATCTCTCAGTTCCTGCAGGCAGCTGAGCGCTATGGCATTAACACCACTGACATCTTCCAAA
CCGTGGACCTCTGGGAAGGAAAGAACATGGCCTGTGTGCAGCGGACGCTGATGAATCTGGGTGGGCTGGCAGTAGCCCGG
GATGATGGGCTCTTCTCTGGGGATCCCAATTGGTTCCCTAAGAAATCCAAGGAGAATCCTCGGAACTTCTCGGACAACCA
GCTGCAAGAGGGCAGGAACGTGATCGGGTTACAGATGGGCACCAACCGCGGGGCGTCTCAGGCAGGCATGACCGGCTACG
GGATGCCACGCCAGATCCTCTGA

Library Parental gene expression (RPM)
SRP051959_colon 62 .35 RPM
SRP051959_heart 31 .41 RPM
SRP051959_kidney 21 .17 RPM
SRP051959_liver 10 .96 RPM
SRP051959_lung 86 .17 RPM
SRP051959_lymph_node 34 .09 RPM
SRP051959_skeletal_muscle 15 .09 RPM
SRP051959_spleen 32 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002068 ortholog_one2one 1 retrogene
retro_btau_1701,
Callithrix jacchus ENSCJAG00000005530 within_species_paralog 1 retrogene
retro_cjac_681,
Callithrix jacchus ENSCJAG00000012755 within_species_paralog 2 retrogenes
retro_cjac_723, retro_cjac_778,
Callithrix jacchus ENSCJAG00000018128 within_species_paralog 3 retrogenes
retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Homo sapiens ENSG00000158710 ortholog_one2one 1 retrogene
retro_hsap_4108,
Macropus eugenii ENSMEUG00000006573 ortholog_one2one 9 retrogenes
retro_meug_1092, retro_meug_1242, retro_meug_128, retro_meug_1442, retro_meug_1998, retro_meug_309, retro_meug_483, retro_meug_690, retro_meug_880,
Myotis lucifugus ENSMLUG00000026228 ortholog_one2many 1 retrogene
retro_mluc_274,
Macaca mulatta ENSMMUG00000004705 ortholog_one2one 1 retrogene
retro_mmul_2328,
Monodelphis domestica ENSMODG00000010032 ortholog_one2one 1 retrogene
retro_mdom_1178,
Nomascus leucogenys ENSNLEG00000013350 ortholog_one2one 1 retrogene
retro_nleu_575,
Pongo abelii ENSPPYG00000000648 ortholog_one2one 2 retrogenes
retro_pabe_3310, retro_pabe_3364,
Pan troglodytes ENSPTRG00000001533 ortholog_one2one 1 retrogene
retro_ptro_2788,
Sus scrofa ENSSSCG00000006395 ortholog_one2one 2 retrogenes
retro_sscr_312, retro_sscr_313,
Tarsius syrichta ENSTSYG00000001645 ortholog_one2one 2 retrogenes
retro_tsyr_1911, retro_tsyr_950,
Tursiops truncatus ENSTTRG00000001814 ortholog_one2one 1 retrogene
retro_ttru_1614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2035 88.00 90.00
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2. retro_cjac_2444 88.89 97.73
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Download FASTA sequences of all ENSCJAG00000006156 retrocopies