Parental gene:

TAGLN2, ENSPTRG00000001533

Aliases:None
Description:transgelin 2 [Source:HGNC Symbol;Acc:11554]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:138256564..138263978(-)


>ENSPTRG00000001533
ATGGCCAACAGGGGACCTGCATATGGCCTGAGCCGGGAGGTGCAGCAGAAGATTGAGAAACAATATGATGCAGATCTGGA
GCAGATCCTGATCCAGTGGATCACCACCCAGTGCCGAAAGGATGTGGGCCGGCCCCAGCCTGGACGCGAGAACTTCCAGA
ACTGGCTCAAGGATGGCACGGTGCTATGTGAGCTCATTAATGCACTGTACCCTGAGGGGCAGGCCCCAGTAAAGAAGATC
CAGGCCTCCACCATGGCCTTCAAGCAGATGGAGCAGATCTCTCAGTTCCTGCAAGCAGCTGAGCGCTATGGCATTAACAC
CACTGACATCTTCCAAACTGTGGACCTCTGGGAAGGAAAGAACATGGCCTGTGTGCAGCGGACGCTGATGAATCTGGGTG
GGCTGGCAGTAGCCCGGGATGATGGGCTCTTCTCTGGGGATCCCAACTGGTTCCCTAAGAAATCCAAGGAGAATCCTCGG
AACTTCTCGGATAACCAGCTGCAAGAGGGCAAGAATGTGATCGGGTTACAGATGGGCACCAACCGCGGGGCGTCTCAGGC
AGGCATGACTGGCTACGGGATGCCACGCCAGATCCTCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 20 .14 RPM
SRP007412_cerebellum 13 .87 RPM
SRP007412_heart 60 .62 RPM
SRP007412_kidney 148 .54 RPM
SRP007412_liver 302 .53 RPM
SRP007412_testis 7 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002068 ortholog_one2one 1 retrogene
retro_btau_1701,
Callithrix jacchus ENSCJAG00000006156 ortholog_one2one 2 retrogenes
retro_cjac_2035, retro_cjac_2444,
Homo sapiens ENSG00000158710 ortholog_one2one 1 retrogene
retro_hsap_4108,
Macropus eugenii ENSMEUG00000006573 ortholog_one2one 9 retrogenes
retro_meug_1092, retro_meug_1242, retro_meug_128, retro_meug_1442, retro_meug_1998, retro_meug_309, retro_meug_483, retro_meug_690, retro_meug_880,
Myotis lucifugus ENSMLUG00000026228 ortholog_one2many 1 retrogene
retro_mluc_274,
Macaca mulatta ENSMMUG00000004705 ortholog_one2one 1 retrogene
retro_mmul_2328,
Monodelphis domestica ENSMODG00000010032 ortholog_one2one 1 retrogene
retro_mdom_1178,
Nomascus leucogenys ENSNLEG00000013350 ortholog_one2one 1 retrogene
retro_nleu_575,
Pongo abelii ENSPPYG00000000648 ortholog_one2one 2 retrogenes
retro_pabe_3310, retro_pabe_3364,
Pan troglodytes ENSPTRG00000000979 within_species_paralog 15 retrogenes
retro_ptro_1061, retro_ptro_1149, retro_ptro_1247, retro_ptro_1447, retro_ptro_1505, retro_ptro_1554, retro_ptro_1871, retro_ptro_215, retro_ptro_2323, retro_ptro_2377, retro_ptro_2831, retro_ptro_2894, retro_ptro_3007, retro_ptro_483, retro_ptro_653,
Sus scrofa ENSSSCG00000006395 ortholog_one2one 2 retrogenes
retro_sscr_312, retro_sscr_313,
Tarsius syrichta ENSTSYG00000001645 ortholog_one2one 2 retrogenes
retro_tsyr_1911, retro_tsyr_950,
Tursiops truncatus ENSTTRG00000001814 ortholog_one2one 1 retrogene
retro_ttru_1614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2788 94.54 91.96
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Download FASTA sequences of all ENSPTRG00000001533 retrocopies