Parental gene:

CNN3, ENSCJAG00000018128

Aliases:CNN3, calponin-3
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:131497083..131527726(-)


>ENSCJAG00000018128
ATGACCCACTTCAACAAGGGCCCTTCCTATGGGCTCTCGGCCGAGGTCAAGAACAAGATTGCTTCCAAGTATGATCATCA
GGCAGAAGAAGATCTTCGCAATTGGATAGAAGAAGTGACAGGCATGAGCATTGGCACCAACTTCCAGCTGGGCTTAAAGG
ATGGCATCATCCTCTGCGAACTCATAAACAAGCTACAGCCAGGCTCAGTGAAGAAGGTCAATGAGTCCTCATTGAACTGG
CCTCAGTTGGAGAATATTGGCAACTTTATTAAAGCTATTCAGGCTTATGGAATGAAGCCACATGACATATTTGAAGCAAA
TGATCTTTTTGAGAATGGAAACATGACCCAGGTTCAGACGACTCTGGTGGCTCTAGCAGGTCTGGCTAAAACAAAAGGAT
TCCATACAACCATTGACATTGGAGTTAAGTATGCAGAAAAACAGACAAGACGTTTTGATGAAGGAAAATTAAAAGCTGGC
CAAAGTGTAATTGGTCTCCAGATGGGAACCAACAAATGTGCCAGCCAGGCAGGTATGACAGCTTATGGGACTAGAAGGCA
TCTTTATGATCCCAAAATGCAAACTGACAAACCTTTTGACCAGACCACAATTAGTCTGCAGATGGGCACTAACAAAGGAG
CCAGCCAGGCAGGGATGTTAGCACCGGGAACCAGAAGAGATATCTACGATCAGAAGCTAACATTACAGCCAGTGGACAAC
TCAACAATTTCTCTACAGATGGGTACCAACAAAGTTGCTTCCCAGAAAGGAATGAGTGTGTATGGGCTTGGGCGGCAAGT
ATATGATCCCAAATACTGTGCTGCTCCGACAGAACCTGTCATTCACAACGGAAGCCAAGGAACAGGAACAAATGGTTCGG
AAATCAGTGATAGTGATTATCAGGCAGAATACCCTGATGAGTATCATGGCGAGTACCAGGATGACTACCCCAGAGATTAC
CCATATAGCGACCAAGGCATTGATTATTAG

Library Parental gene expression (RPM)
SRP051959_colon 59 .60 RPM
SRP051959_heart 62 .71 RPM
SRP051959_kidney 140 .53 RPM
SRP051959_liver 66 .80 RPM
SRP051959_lung 71 .95 RPM
SRP051959_lymph_node 18 .10 RPM
SRP051959_skeletal_muscle 17 .10 RPM
SRP051959_spleen 36 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016707 possible_ortholog 1 retrogene
retro_amel_1412,
Bos taurus ENSBTAG00000020345 possible_ortholog 1 retrogene
retro_btau_1211,
Callithrix jacchus ENSCJAG00000005530 within_species_paralog 1 retrogene
retro_cjac_681,
Callithrix jacchus ENSCJAG00000006156 within_species_paralog 2 retrogenes
retro_cjac_2035, retro_cjac_2444,
Callithrix jacchus ENSCJAG00000012755 within_species_paralog 2 retrogenes
retro_cjac_723, retro_cjac_778,
Dasypus novemcinctus ENSDNOG00000012883 possible_ortholog 3 retrogenes
retro_dnov_223, retro_dnov_403, retro_dnov_815,
Equus caballus ENSECAG00000020188 ortholog_one2many 1 retrogene
retro_ecab_655,
Echinops telfairi ENSETEG00000010095 ortholog_one2many 1 retrogene
retro_etel_638,
Homo sapiens ENSG00000117519 possible_ortholog 1 retrogene
retro_hsap_3419,
Gorilla gorilla ENSGGOG00000013870 possible_ortholog 1 retrogene
retro_ggor_2312,
Macropus eugenii ENSMEUG00000002921 possible_ortholog 2 retrogenes
retro_meug_2020, retro_meug_42,
Macaca mulatta ENSMMUG00000001690 possible_ortholog 1 retrogene
retro_mmul_1747,
Monodelphis domestica ENSMODG00000004326 ortholog_one2many 1 retrogene
retro_mdom_442,
Mustela putorius furo ENSMPUG00000003332 possible_ortholog 1 retrogene
retro_mputfur_896,
Mus musculus ENSMUSG00000053931 possible_ortholog 2 retrogenes
retro_mmus_1052, retro_mmus_2544,
Nomascus leucogenys ENSNLEG00000011207 ortholog_one2many 5 retrogenes
retro_nleu_122, retro_nleu_1342, retro_nleu_2698, retro_nleu_480, retro_nleu_668,
Pan troglodytes ENSPTRG00000000979 ortholog_one2many 15 retrogenes
retro_ptro_1061, retro_ptro_1149, retro_ptro_1247, retro_ptro_1447, retro_ptro_1505, retro_ptro_1554, retro_ptro_1871, retro_ptro_215, retro_ptro_2323, retro_ptro_2377, retro_ptro_2831, retro_ptro_2894, retro_ptro_3007, retro_ptro_483, retro_ptro_653,
Sorex araneus ENSSARG00000012874 possible_ortholog 1 retrogene
retro_sara_582,
Sarcophilus harrisii ENSSHAG00000002670 ortholog_one2many 1 retrogene
retro_shar_567,
Tarsius syrichta ENSTSYG00000010749 ortholog_one2many 2 retrogenes
retro_tsyr_1458, retro_tsyr_1907,
Vicugna pacos ENSVPAG00000004889 ortholog_one2many 2 retrogenes
retro_vpac_190, retro_vpac_449,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_533 83.03 100.00
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2. retro_cjac_861 91.19 100.00
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3. retro_cjac_1331 84.75 89.06
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Download FASTA sequences of all ENSCJAG00000018128 retrocopies