Parental gene:

CNN3, ENSDNOG00000012883

Aliases:None
Description:calponin 3, acidic [Source:HGNC Symbol;Acc:2157]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3759:90800..122089(-)


>ENSDNOG00000012883
CAGGCTGTGGGCAGCCGCGGAGCCGGCGGGCGAGCGGGAGGCTTCGCGGGACCCAGTCGGGCTGAGTTGCCGAGGCAAAG
CCCGCGCTCCGCGGTCGTGTCCTGCACCGCCAGGAGCGAGCTCGGGCATCTCCCGCTGCGGCCACCCCTCGGGGCCAGGA
GCGAGGAAGCCGAGTGCGAGAGCCTTCAGACCCTAGCGCCGGCCGCCCGAGCCACCATGACCCACTTCAACAAGGGTCCT
TCCTACGGACTCTCGGCTGAGGTCAAGAACAAGATTGCGTCCAAGTATGACCACCAGGCAGAGGAAGATCTCCGCAGTTG
GATAGAGGAGGTGACGGGCATGAGCATTGGCACCAACTTTCAGCTGGGCCTGAAAGATGGCATAATCCTCTGCGAACTCA
TAAACAAACTACAGCCGGGTTCAGTGAAGAAGGTCAATGAGTCCTCATTAAACTGGCCTCAGTTGGAGAATATTGGCAAC
TTCATTAAAGCTATTCAGGCTTATGGTATGAAGCCACATGACATATTTGAAGCAAACGATCTTTTTGAGAATGGAAATAT
GACCCAGGTTCAGACTACACTGGTGGCTCTTGCAGGTCTGGCTAAAACAAAAGGATTCCATACCATCGACATTGGAGAGT
ATGCAGAAAAACAGAGACGTTTTGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGAACCAAC
AAATGTGCCAGCCAAGCAGGTATGACAGCCTATGGGACTAGGAGACATCTTTATGATCCCAAGATGCAAACTGACAAACC
TTTTGACCAGACCACAATTAGTCTGCAGATGGGCACTAACAAAGGAGCCAGCCAGGCAGGAATGTTAGCACCAGGTACCA
GAAGAGACATCTATGATCAGAAGCTAACACTACAACCAGTGGACAACTCGACGATTTCTCTACAGATGGGGACCAACAAA
GTTGCTTCCCAGAAAGGAATGAGTGTATATGGGCTTGGGCGGCAAGTGTACGATCCCAAATACTGTGCTGCTCCGACAGA
ACCCGTCATTCACAACGGAAGCCAAGGAACAGGAACAAATGGGTCAGAAATCAGTGATAGCGATTATCAGGCAGAATACC
CCGATGAATATCATGGCGAGTACCAAGATGACTACCCCAGAGATTACCAATACGGGGACCAAGGCATTGATTATTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 140 .99 RPM
SRP012922_cerebellum 78 .22 RPM
SRP012922_heart 30 .16 RPM
SRP012922_kidney 133 .06 RPM
SRP012922_liver 72 .45 RPM
SRP012922_lung 197 .47 RPM
SRP012922_quadricep_muscle 22 .67 RPM
SRP012922_spleen 171 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018128 possible_ortholog 3 retrogenes
retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Macropus eugenii ENSMEUG00000002921 possible_ortholog 2 retrogenes
retro_meug_2020, retro_meug_42,
Monodelphis domestica ENSMODG00000004326 ortholog_one2one 1 retrogene
retro_mdom_442,
Mustela putorius furo ENSMPUG00000003332 ortholog_one2one 1 retrogene
retro_mputfur_896,
Sarcophilus harrisii ENSSHAG00000002670 ortholog_one2one 1 retrogene
retro_shar_567,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_223 76.01 79.15
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2. retro_dnov_403 74.63 65.83
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3. retro_dnov_815 60.13 77.39
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Download FASTA sequences of all ENSDNOG00000012883 retrocopies