RetrogeneDB - Parental gene ENSBTAG00000016265 details

                            
>ENSBTAG00000016265
ATGGTGAAAGAAACCACTTACTATGATGTTTTGGGGGTCAAACCCAATGCCACCCAAGAAGAATTGAAAAAGGCTTACAG

GAAACTGGCCTTGAAGTACCACCCTGATAAGAATCCAAATGAAGGCGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAG

TGCTCTCTGATGCAAAGAAAAGGGAGTTATATGACAAAGGAGGAGAACAGGCAATTAAAGAAGGTGGAGCAGGTGGTGGT

TTTGGCTCCCCCATGGACATCTTTGATATGTTTTTCGGAGGAGGAGGCAGGATGCAGAGAGAGAGGAGAGGTAAAAACGT

TGTCCATCAACTTACAGTAACTTTAGAAGATTTATATAATGGTGCAACAAGAAAACTAGCTCTGCAAAAGAATGTGATTT

GTGACAAATGTGAAGGCCGAGGTGGTAAAAAAGGAGCAGTAGAATGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATA

AGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTCTGCATGGAGTGCCAGGGCCATGGGGAGCGGAT

CAGTCCTAAAGATAGATGTAAAAGCTGCAATGGAAGGAAGATAGTTCGAGAAAAGAAAATTCTAGAAGTTCATATTGACA

AAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCAGGACTGGAGCCAGGAGATATTATC

ATTGTTTTAGATCAGAAGGACCATGCTGTTTTTACTCGACGAGGAGAAGACCTTTTCATGTGTATGGACATACAGCTGGT

TGAGGCATTGTGTGGCTTCCAAAAGCCAATATCTACTCTTGACAACCGAACCATAGTCATCACTTCTCATCCAGGTCAAA

TTGTCAAGCATGGAGATATCAAGTGTGTGCTAAATGAAGGCATGCCAATTTATCGTAGGCCATACGAAAAGGGTCGCCTA

ATCATTGAATTTAAGGTAAACTTTCCTGAGAATGGCTTTCTCTCTCCTGATAAACTCTCTTTGCTGGAAAAACTTCTGCC

TGAGAGGAAGGAAGTAGAAGAGACTGATGAAATGGACCAGGTAGAATTAGTGGACTTTGATCCAAATCAGGAAAGACGGC

GCCATTACAATGGAGAAGCATACGAGGATGATGAACATCATCCTCGGGGTGGTGTTCAGTGTCAGACCTCTTAG

Library	Parental gene expression (RPM)
ERP005899_liver	47 .87 RPM
ERP005899_muscle	74 .27 RPM
SRP017611_brain	72 .49 RPM
SRP017611_kidney	41 .61 RPM
SRP017611_liver	41 .83 RPM
SRP030211_testis	231 .66 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000007589	ortholog_one2one	4 retrogenes	retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Bos taurus	ENSBTAG00000003757	within_species_paralog	3 retrogenes	retro_btau_1215, retro_btau_1625, retro_btau_798,
Canis familiaris	ENSCAFG00000001818	ortholog_one2one	23 retrogenes	retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Callithrix jacchus	ENSCJAG00000008022	possible_ortholog	10 retrogenes	retro_cjac_1645, retro_cjac_1777, retro_cjac_2015, retro_cjac_2120, retro_cjac_2730, retro_cjac_2731, retro_cjac_2763, retro_cjac_3037, retro_cjac_3762, retro_cjac_887,
Cavia porcellus	ENSCPOG00000000462	possible_ortholog	6 retrogenes	retro_cpor_1456, retro_cpor_225, retro_cpor_386, retro_cpor_396, retro_cpor_561, retro_cpor_781,
Dasypus novemcinctus	ENSDNOG00000018342	ortholog_one2one	3 retrogenes	retro_dnov_1139, retro_dnov_640, retro_dnov_884,
Felis catus	ENSFCAG00000008729	possible_ortholog	5 retrogenes	retro_fcat_1241, retro_fcat_1407, retro_fcat_1502, retro_fcat_1984, retro_fcat_811,
Homo sapiens	ENSG00000086061	ortholog_one2one	4 retrogenes	retro_hsap_2331, retro_hsap_2569, retro_hsap_3647, retro_hsap_4889,
Gorilla gorilla	ENSGGOG00000007030	possible_ortholog	3 retrogenes	retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Myotis lucifugus	ENSMLUG00000016086	possible_ortholog	7 retrogenes	retro_mluc_1245, retro_mluc_1485, retro_mluc_1737, retro_mluc_1878, retro_mluc_2062, retro_mluc_2579, retro_mluc_576,
Monodelphis domestica	ENSMODG00000003384	ortholog_one2one	7 retrogenes	retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Mustela putorius furo	ENSMPUG00000004231	possible_ortholog	2 retrogenes	retro_mputfur_1543, retro_mputfur_487,
Nomascus leucogenys	ENSNLEG00000005268	possible_ortholog	4 retrogenes	retro_nleu_1255, retro_nleu_2550, retro_nleu_2793, retro_nleu_509,
Oryctolagus cuniculus	ENSOCUG00000004833	possible_ortholog	2 retrogenes	retro_ocun_516, retro_ocun_70,
Pongo abelii	ENSPPYG00000019141	ortholog_one2one	4 retrogenes	retro_pabe_1892, retro_pabe_2111, retro_pabe_2559, retro_pabe_2994,
Pan troglodytes	ENSPTRG00000020852	ortholog_one2one	4 retrogenes	retro_ptro_1499, retro_ptro_1705, retro_ptro_177, retro_ptro_2472,
Rattus norvegicus	ENSRNOG00000007029	possible_ortholog	2 retrogenes	retro_rnor_2208, retro_rnor_608,
Sarcophilus harrisii	ENSSHAG00000012366	ortholog_one2one	1 retrogene	retro_shar_762,
Ictidomys tridecemlineatus	ENSSTOG00000005200	possible_ortholog	4 retrogenes	retro_itri_265, retro_itri_303, retro_itri_378, retro_itri_809,
Tupaia belangeri	ENSTBEG00000000596	ortholog_one2one	23 retrogenes	retro_tbel_1281, retro_tbel_134, retro_tbel_1529, retro_tbel_1542, retro_tbel_2260, retro_tbel_2293, retro_tbel_2316, retro_tbel_2428, retro_tbel_2445, retro_tbel_2917, retro_tbel_2965, retro_tbel_2972, retro_tbel_329, retro_tbel_3345, retro_tbel_3353, retro_tbel_3692, retro_tbel_4014, retro_tbel_4223, retro_tbel_432, retro_tbel_591, retro_tbel_617, retro_tbel_634, retro_tbel_842,
Tursiops truncatus	ENSTTRG00000007387	ortholog_one2one	4 retrogenes	retro_ttru_1181, retro_ttru_1551, retro_ttru_567, retro_ttru_783,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_btau_574	94.22	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_btau_828	97.23	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_btau_1440	85.87	71.28	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_btau_1599	83.38	88.16	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_btau_1800	98.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_btau_1826	96.73	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSBTAG00000016265 retrocopies

Parental gene:	DNAJA1, ENSBTAG00000016265
Aliases:	None
Description:	DnaJ homolog subfamily A member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5E954]
Organism:	*Cow (Bos taurus)*
Coordinates:	8:76107823..76118491(+)

Parental gene:

DNAJA1, ENSBTAG00000016265