Parental gene:

DNAJA1, ENSPTRG00000020852

Aliases:None
Description:Pan troglodytes DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246534]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:33415372..33429240(+)


>ENSPTRG00000020852
ATGGTGAAAGAAACAACTTACTACGATGTTTTGGGGGTCAAACCCAATGCTACTCAGGAAGAATTGAAAAAGGCTTATAG
GAAACTGGCCTTGAAGTACCATCCTGATAAGAATCCAAATGAAGGAGAGAAGTTTAAACAGATTTCTCAAGCTTACGAAG
TTCTCTCTGATGCAAAGAAAAGGGAATTATATGACAAAGGAGGAGAACAGGCAATTAAAGAGGGTGGAGCAGGTGGCGGT
TTTGGCTCCCCCATGGACATCTTTGATATGTTTTTTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAAAATGT
TGTACATCAGCTCTCAGTAACCCTAGAAGACTTATATAATGGTGCAACAAGAAAACTGGCTCTGCAAAAGAATGTGATTT
GTGACAAATGTGAAGGTAGAGGAGGTAAGAAAGGAGCAGTAGAGTGCTGTCCCAATTGCCGAGGTACTGGAATGCAAATA
AGAATTCATCAGATAGGACCTGGAATGGTTCAGCAAATTCAGTCTGTGTGCATGGAGTGCCAGGGCCATGGGGAGCGGAT
CAGTCCTAAAGATAGATGTAAAAGCTGCAACGGAAGGAAGATAGTTCGAGAGAAGAAAATTTTAGAAGTTCATATTGACA
AAGGCATGAAAGATGGCCAGAAGATAACATTCCATGGTGAAGGAGACCAAGAACCAGGACTGGAGCCAGGCGATATTATC
ATTGTGTTAGATCAGAAGGACCATGCTGTTTTTACTCGACGAGGAGAAGACCTTTTCATGTGTATGGACATACAGCTCGT
TGAAGCATTGTGTGGCTTCCAGAAGCCAATATCTACTCTTGACAACCGAACCATCGTCATCACCTCTCATCCAGGTCAGA
TTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCTA
ATCATCGAATTTAAGGTAAACTTTCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTCTTTGCTGGAAAAACTCCTACC
CGAGAGGAAGGAAGTGGAAGAGACTGATGAGATGGATCAAGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGACGGC
GCCACTACAATGGAGAAGCATATGAGGATGATGAACATCATCCCAGAGGTGGTGTTCAGTGTCAGACCTCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 112 .41 RPM
SRP007412_cerebellum 153 .58 RPM
SRP007412_heart 117 .78 RPM
SRP007412_kidney 165 .46 RPM
SRP007412_liver 192 .35 RPM
SRP007412_testis 668 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007589 ortholog_one2one 4 retrogenes
retro_amel_1509, retro_amel_455, retro_amel_756, retro_amel_946,
Bos taurus ENSBTAG00000016265 ortholog_one2one 6 retrogenes
retro_btau_1440, retro_btau_1599, retro_btau_1800, retro_btau_1826, retro_btau_574, retro_btau_828,
Canis familiaris ENSCAFG00000001818 ortholog_one2one 23 retrogenes
retro_cfam_1111, retro_cfam_1153, retro_cfam_1218, retro_cfam_1229, retro_cfam_1315, retro_cfam_1352, retro_cfam_1420, retro_cfam_1457, retro_cfam_1520, retro_cfam_1668, retro_cfam_1833, retro_cfam_1941, retro_cfam_1949, retro_cfam_1994, retro_cfam_2004, retro_cfam_2162, retro_cfam_352, retro_cfam_391, retro_cfam_419, retro_cfam_749, retro_cfam_751, retro_cfam_923, retro_cfam_993,
Callithrix jacchus ENSCJAG00000008022 possible_ortholog 10 retrogenes
retro_cjac_1645, retro_cjac_1777, retro_cjac_2015, retro_cjac_2120, retro_cjac_2730, retro_cjac_2731, retro_cjac_2763, retro_cjac_3037, retro_cjac_3762, retro_cjac_887,
Cavia porcellus ENSCPOG00000000462 possible_ortholog 6 retrogenes
retro_cpor_1456, retro_cpor_225, retro_cpor_386, retro_cpor_396, retro_cpor_561, retro_cpor_781,
Dasypus novemcinctus ENSDNOG00000018342 ortholog_one2one 3 retrogenes
retro_dnov_1139, retro_dnov_640, retro_dnov_884,
Felis catus ENSFCAG00000008729 possible_ortholog 5 retrogenes
retro_fcat_1241, retro_fcat_1407, retro_fcat_1502, retro_fcat_1984, retro_fcat_811,
Homo sapiens ENSG00000086061 ortholog_one2one 4 retrogenes
retro_hsap_2331, retro_hsap_2569, retro_hsap_3647, retro_hsap_4889,
Gorilla gorilla ENSGGOG00000007030 possible_ortholog 3 retrogenes
retro_ggor_1603, retro_ggor_2463, retro_ggor_418,
Myotis lucifugus ENSMLUG00000016086 possible_ortholog 7 retrogenes
retro_mluc_1245, retro_mluc_1485, retro_mluc_1737, retro_mluc_1878, retro_mluc_2062, retro_mluc_2579, retro_mluc_576,
Monodelphis domestica ENSMODG00000003384 ortholog_one2one 7 retrogenes
retro_mdom_1140, retro_mdom_1253, retro_mdom_1451, retro_mdom_1627, retro_mdom_1824, retro_mdom_742, retro_mdom_874,
Mustela putorius furo ENSMPUG00000004231 possible_ortholog 2 retrogenes
retro_mputfur_1543, retro_mputfur_487,
Nomascus leucogenys ENSNLEG00000005268 possible_ortholog 4 retrogenes
retro_nleu_1255, retro_nleu_2550, retro_nleu_2793, retro_nleu_509,
Oryctolagus cuniculus ENSOCUG00000004833 possible_ortholog 2 retrogenes
retro_ocun_516, retro_ocun_70,
Pongo abelii ENSPPYG00000019141 ortholog_one2one 4 retrogenes
retro_pabe_1892, retro_pabe_2111, retro_pabe_2559, retro_pabe_2994,
Rattus norvegicus ENSRNOG00000007029 possible_ortholog 2 retrogenes
retro_rnor_2208, retro_rnor_608,
Sarcophilus harrisii ENSSHAG00000012366 ortholog_one2one 1 retrogene
retro_shar_762,
Ictidomys tridecemlineatus ENSSTOG00000005200 possible_ortholog 4 retrogenes
retro_itri_265, retro_itri_303, retro_itri_378, retro_itri_809,
Tupaia belangeri ENSTBEG00000000596 ortholog_one2one 23 retrogenes
retro_tbel_1281, retro_tbel_134, retro_tbel_1529, retro_tbel_1542, retro_tbel_2260, retro_tbel_2293, retro_tbel_2316, retro_tbel_2428, retro_tbel_2445, retro_tbel_2917, retro_tbel_2965, retro_tbel_2972, retro_tbel_329, retro_tbel_3345, retro_tbel_3353, retro_tbel_3692, retro_tbel_4014, retro_tbel_4223, retro_tbel_432, retro_tbel_591, retro_tbel_617, retro_tbel_634, retro_tbel_842,
Tursiops truncatus ENSTTRG00000007387 ortholog_one2one 4 retrogenes
retro_ttru_1181, retro_ttru_1551, retro_ttru_567, retro_ttru_783,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_177 74.22 56.17
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2. retro_ptro_1499 71.57 50.38
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3. retro_ptro_1705 76.13 55.67
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4. retro_ptro_2472 68.66 100.00
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Download FASTA sequences of all ENSPTRG00000020852 retrocopies