RetrogeneDB ID: retro_ttru_647

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2970:897643..898079(+)
• Located in intron of: ENSTTRG00000016494

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAGOHB
• Ensembl ID: ENSTTRG00000001272
• Aliases: None
• Description: mago-nashi homolog B (Drosophila) [Source:HGNC Symbol;Acc:25504]

Sequence

>retro_ttru_647
GCCATGGAGAGTGACTTCTATCTGCATTACTGCAGGGGTCACAAGGGCAAGTTCGGCTTCGAACTCCTGGAGTCTGAGTT
CTGACCCAATGGGATCGAGATATGCCAATAACAACAGTTACAAAACTGATATGATCAGAAAAGAGGTTTATGTACATAAA
AGTGTGATGGAGGAACTGAAGAGAATAATCGATGACACTGAAATTCCCAAAGAGGATAATGCTTTGTGGCCTCCTCCCGA
CTAAGGGCGCCGGCAGGAGCTTGAAATCATCATTGGAGATGAACACATTTCCTTCATGACATCAAAAATTGATCCCCTTA
TTGATGTCAATCAATCCAAGGATCCAGAAGGCTTACGAGTATTTTATTATCTTCTCCAGGACCTGAAGTGTTTGGTCTTT
GATCTTACTGAATTACACTTCAAGATTAAGCCAATC

Alignment

ORF - retro_ttru_647 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.05 %
• Parental protein coverage: 99.32 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AMASDFYLRYYVGHKGKFGHEFLEFEF-RPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSE
          AM.SDFYL.Y..GHKGKFG.E.LE.EF..P.G..RYANN..YK.D.MIRKE.YVHKSVMEELKRIIDD.E
Retrocopy AMESDFYLHYCRGHKGKFGFELLESEF>DPMGS-RYANNNSYKTD-MIRKEVYVHKSVMEELKRIIDDTE

Parental  ITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIG
          I.KED.ALWPPPD...RQELEI.IGDEHISF.TSKI..LIDVNQSKDPEGLRVFYYL.QDLKCLVF.L..
Retrocopy IPKEDNALWPPPD*GRRQELEIIIGDEHISFMTSKIDPLIDVNQSKDPEGLRVFYYLLQDLKCLVFDLTE

Parental  LHFKIKPI
          LHFKIKPI
Retrocopy LHFKIKPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_647 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_647 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000019235	1 retrocopy	retro_btau_399,
Choloepus hoffmanni	ENSCHOG00000004382	1 retrocopy	retro_chof_1730,
Dasypus novemcinctus	ENSDNOG00000005997	4 retrocopies	retro_dnov_140, retro_dnov_347, retro_dnov_423, retro_dnov_891,
Echinops telfairi	ENSETEG00000016591	3 retrocopies	retro_etel_1022, retro_etel_1566, retro_etel_2147,
Macropus eugenii	ENSMEUG00000001782	1 retrocopy	retro_meug_324,
Myotis lucifugus	ENSMLUG00000003527	2 retrocopies	retro_mluc_1039, retro_mluc_2484,
Macaca mulatta	ENSMMUG00000005082	1 retrocopy	retro_mmul_1246,
Monodelphis domestica	ENSMODG00000000462	1 retrocopy	retro_mdom_424,
Ochotona princeps	ENSOPRG00000000548	2 retrocopies	retro_opri_1171, retro_opri_308,
Sus scrofa	ENSSSCG00000000635	1 retrocopy	retro_sscr_971,
Tursiops truncatus	ENSTTRG00000001272	2 retrocopies	retro_ttru_515, retro_ttru_647 ,