RetrogeneDB ID: retro_mluc_1039

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429789:11170961..11171188(-)
• Located in intron of: ENSMLUG00000012148

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAGOHB
• Ensembl ID: ENSMLUG00000003527
• Aliases: None
• Description: None

Sequence

>retro_mluc_1039
CAGCCCAATGGGAAATTGAGATATGCCAACGACAGCAATTACAAAAATGTCATGATCAGAAAAGAGGCTTATGTACATAA
AGTGTGATGGAGGAACTGAAGAGAATTGCTGAAAGTGAAATTACCAAAGAGAATGATGTTGTGGCCTCCCCCAACCGAGT
AGGCTGGCAGGAGCTTGAATTCATTATTGGAGATGAACACAATTCTTTCACAACATCAAAAATTGGT

Alignment

ORF - retro_mluc_1039 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.25 %
• Parental protein coverage: 53.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RPDGKLRYANNSNYKNDVMIRKEAYVHK-SVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDE
          .P.GKLRYAN.SNYKN.VMIRKEAYVHK.SVMEELKRI...SEITKE.D.....P.RVG.QELE..IGDE
Retrocopy QPNGKLRYANDSNYKN-VMIRKEAYVHK<SVMEELKRIA-ESEITKENDVV-ASPNRVGWQELEFIIGDE

Parental  HISFTTSKIG
          H.SFTTSKIG
Retrocopy HNSFTTSKIG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1039 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000019235	1 retrocopy	retro_btau_399,
Choloepus hoffmanni	ENSCHOG00000004382	1 retrocopy	retro_chof_1730,
Dasypus novemcinctus	ENSDNOG00000005997	4 retrocopies	retro_dnov_140, retro_dnov_347, retro_dnov_423, retro_dnov_891,
Echinops telfairi	ENSETEG00000016591	3 retrocopies	retro_etel_1022, retro_etel_1566, retro_etel_2147,
Macropus eugenii	ENSMEUG00000001782	1 retrocopy	retro_meug_324,
Myotis lucifugus	ENSMLUG00000002444	1 retrocopy	retro_mluc_1844,
Myotis lucifugus	ENSMLUG00000003527	2 retrocopies	retro_mluc_1039 , retro_mluc_2484,
Macaca mulatta	ENSMMUG00000005082	1 retrocopy	retro_mmul_1246,
Monodelphis domestica	ENSMODG00000000462	1 retrocopy	retro_mdom_424,
Ochotona princeps	ENSOPRG00000000548	2 retrocopies	retro_opri_1171, retro_opri_308,
Sus scrofa	ENSSSCG00000000635	1 retrocopy	retro_sscr_971,
Tursiops truncatus	ENSTTRG00000001272	2 retrocopies	retro_ttru_515, retro_ttru_647,