RetrogeneDB ID: retro_mputfur_601

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896925.1:4852045..4852990(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000014484
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000000923
• Aliases: None
• Description: None

Sequence

>retro_mputfur_601
AAAAGAAGAAGCTATACTGTATCTACGTTGCTATTGGTCAGAAGAGATCCACTTGCCCAGTTGGTGAAGAGACTCACAGA
TGCAGATGCCATGAAGTACACCATTGTGGTTTCGGCTGCTGCTTTTGATGCTGCTCCACTTCAGTACCTGGCTCCTTATT
CTGGCTGTTCTATGGGAGAATATTTTAGAGATAATGGCAAACATGCTTTGATCATCTACGATGACTTATCCAAACAGGCT
GTTGCCTATCGTCAGATGTCTCTGCTGCTCCGCTGGCCTCCTGGTCGTGAGGCCTATCCTGGTGATGTGTTCTACCTACA
TTCCCGTCTCCTAGAGAGAGCAGCCAAAATGAACGATTCTTTTGGTGGTGGCTCCTTGACTGCTTTACCAGTCATAGAAA
CGCAAGCTGGTGATGTGTCTGCTTACATTCCAACAAATGTCATTTCTATCACTGACGGACAGATCTTCTTGGAAACAGAA
TTGTTCTACAAAGGTATCCGCCCTGCCATTAACGTTGGTTTGTCTGTGTCCCGTGTTGGATCTGCTGCCCAAACCAGGGC
CATGAAGCAGGTGGCAGGTACCATGAAGCTGGAATTGGCTCAGTATCGTGAGGTTGCTGCTTTTGCCCAGTTCGGTTCTG
ACCTTGATGCTGCCACTCAACAGCTCTTGAGTCGTGGTGTGCGATTGACTGAGTTGCTGAAGCAAGGACAGTATTCTCCC
ATGGCAATTGAAGAACAAGTGCCTATTATTTATGCTGGTGTAAGAGGGTATCTTGATAAATTGGAGCCCAGCAAGATCAC
AAAGTTTGAGCATGCTTTCCTGGCTCATGTTATCAGCCAGCACCAGGCCCTGTTGGGCAATATTAGGACTGATGGAAAGA
TCTCAGAACAGTCAGATGCTAAGCTGAAAGAAATTGTAACAAACTTCTTGGCTGGATTTGAAGCT

Alignment

ORF - retro_mputfur_601 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.65 %
• Parental protein coverage: 56.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHAL
          K...Y.........R...AQLVKRLTDADAMKYTIVVSA.A.DAAPLQYLAPYSGCSMGEYFRDNGKHAL
Retrocopy KRRSYTVSTLLLVRRDPLAQLVKRLTDADAMKYTIVVSAAAFDAAPLQYLAPYSGCSMGEYFRDNGKHAL

Parental  IIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVS
          IIYDDLSKQAVAYRQMSLLLR.PPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVS
Retrocopy IIYDDLSKQAVAYRQMSLLLRWPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVS

Parental  AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ
          AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ
Retrocopy AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ

Parental  FGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFEHAFLAHVISQ
          FGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQV..IYAGVRGYLDKLEPSKITKFEHAFLAHVISQ
Retrocopy FGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVPIIYAGVRGYLDKLEPSKITKFEHAFLAHVISQ

Parental  HQALLGNIRTDGKISEQSDAKLKEIVTNFLAGFEA
          HQALLGNIRTDGKISEQSDAKLKEIVTNFLAGFEA
Retrocopy HQALLGNIRTDGKISEQSDAKLKEIVTNFLAGFEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_601 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_601 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 20 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002507	2 retrocopies	retro_btau_1380, retro_btau_1426,
Canis familiaris	ENSCAFG00000017648	2 retrocopies	retro_cfam_1483, retro_cfam_516,
Dasypus novemcinctus	ENSDNOG00000006331	2 retrocopies	retro_dnov_1740, retro_dnov_2525,
Equus caballus	ENSECAG00000021561	1 retrocopy	retro_ecab_788,
Homo sapiens	ENSG00000152234	1 retrocopy	retro_hsap_1702,
Gorilla gorilla	ENSGGOG00000016560	1 retrocopy	retro_ggor_1275,
Macropus eugenii	ENSMEUG00000009770	1 retrocopy	retro_meug_151,
Meleagris gallopavo	ENSMGAG00000009963	1 retrocopy	retro_mgal_14,
Microcebus murinus	ENSMICG00000017500	1 retrocopy	retro_mmur_1210,
Myotis lucifugus	ENSMLUG00000009856	1 retrocopy	retro_mluc_1198,
Macaca mulatta	ENSMMUG00000003570	1 retrocopy	retro_mmul_1208,
Mustela putorius furo	ENSMPUG00000000923	1 retrocopy	retro_mputfur_601 ,
Nomascus leucogenys	ENSNLEG00000010973	1 retrocopy	retro_nleu_1334,
Oryctolagus cuniculus	ENSOCUG00000003967	1 retrocopy	retro_ocun_1235,
Otolemur garnettii	ENSOGAG00000026684	1 retrocopy	retro_ogar_2623,
Pongo abelii	ENSPPYG00000009130	1 retrocopy	retro_pabe_1363,
Pan troglodytes	ENSPTRG00000009991	1 retrocopy	retro_ptro_1151,
Sarcophilus harrisii	ENSSHAG00000017177	1 retrocopy	retro_shar_109,
Tarsius syrichta	ENSTSYG00000007804	1 retrocopy	retro_tsyr_1186,
Tursiops truncatus	ENSTTRG00000005118	1 retrocopy	retro_ttru_159,