RetrogeneDB ID:

retro_nleu_1334

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397289.1:25143448..25144730(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP5A1
Ensembl ID:ENSNLEG00000010973
Aliases:None
Description:ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1RK60]


Retrocopy-Parental alignment summary:






>retro_nleu_1334
AAGGAAGGAGGTATAGTGAAGAGGACAGGAACCTTTGTGGATGTTCCAGTCGGTGAGGAGCTGTTGGGTCGTGTAGTTGA
TGCTCTTGGTAATGCTATTGATGGAAAGGGTCCAGTTGGTTCCAAGACCCATAAGTGAGTCGGTCTGAAAGCCCCCAGAA
TCATTCCTCGAACTTCAGTGCAGGAACCAATGCCGACTGGCATTAAGACTGTGGATAGCTTGGTGCCAATTGGTCATGGT
CAGCATGAGCTGATTATTGGTGACCGAAAGACTGGGAAAACCTCAATTGCTATTGACACAATCATTAACCAGAAACATTT
CAATGATAGATCTGAAGAAAAGAAGAAGCTGTACTGTATCTATGTTGCTATTGGTCAAAAGAGATCCACTGTTGCTCAGT
TGGTGAAGAGACTTACAGATGCAGATGCCGTGAAGTACACCATTGTGGTGTCAGCTGCAGGCTCAGATGCTGCCCTACTT
CAGTACCTGGCTCCTTACTCTGACTGTTCCATGGGAGAGTATTTTAGAGATGATGGCAAATATTCTTTGATCATCTGTGA
CGACTTATCCAAACAGGCTGTTGCTTACCGTCAGATGTCTCTGTTGCTCCACCGACCCCCTGATCGTAAGGCCTGTCCTG
GTGATGTGTTTTACCTACACTCCCAGTTGCTGAAGAGAGCAGCCAAAATGAATGATGCTTTTGGTGGTGGCTCCTTGACT
GCTTTGCTAGTCATAGAAACACAGGCTGGTGATGTGTCTGCTTACATTCCAACGAATGTCATTTCCATCACTGACAGACA
GATCTTCTTGGAAACAGAATTGTTCTACAGAGATATCCGCTCTGCCGTTAACATTGGTCTGTCTGTGTCTCGTGTTGGAT
CTGCTGCCCAAACCAGGACTATGAAGCAGGTGGCAGGTACCATAAGCTGGAATTGGCTCAGTACTGTGAAGTTGCTGCTT
TTGCCCAGTTTGGTTCTGACCTCGATGCTCCCACTCAACAACTTTTAAGTCGTGGTGTGCATCTAACTGAGTTGCTGAAG
CAAGGACAGTATTCTCCCACGGTTATTGAAGAACAAGTGGCTGTTATCTATGCGGGTGTAAGGGGGTATCTTGATAAACT
GGAGCCCAGCAAGATCACAAAGTTTGAGAATGCTTTCTTGTCTCATGTTGTCAGCCAGCACTAAGCCCTGTTGGCACTAT
CAGGGCTGATGGAAAGATCTCAGAAGACTCAGATGCAAAGCTGACGGAGATTGTAACAAACTTCTTGGCTGGATTTGAAG
CT

ORF - retro_nleu_1334 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.08 %
Parental protein coverage: 77.44 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKA
KEG.IVKRTG..VDVPVGEELLGRVVDALGNAIDGKGP.GSKT...VGLKAP.IIPR.SV.EPM.TGIK.
RetrocopyKEGGIVKRTGTFVDVPVGEELLGRVVDALGNAIDGKGPVGSKTHK*VGLKAPRIIPRTSVQEPMPTGIKT
ParentalVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTD
VDSLVPIG.GQ.ELIIGDR.TGKTSIAIDTIINQK.FND.S.EKKKLYCIYVAIGQKRSTVAQLVKRLTD
RetrocopyVDSLVPIGHGQHELIIGDRKTGKTSIAIDTIINQKHFNDRSEEKKKLYCIYVAIGQKRSTVAQLVKRLTD
ParentalADAMKYTIVVSATASDAAPLQYLAPYSGCSIGRVFLETMGKHTLIIYDDLSQTAVAYRQMSLLLRRPPGR
ADA.KYTIVVSA..SDAA.LQYLAPYS.CS.G..F....GK..LII.DDLS..AVAYRQMSLLL.RPP.R
RetrocopyADAVKYTIVVSAAGSDAALLQYLAPYSDCSMGEYFRDD-GKYSLIICDDLSKQAVAYRQMSLLLHRPPDR