Parental gene:

ATP5A1, ENSOCUG00000003967

Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle [Source:HGNC Symbol;Acc:823]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:9:87502124..87513233(-)


>ENSOCUG00000003967
ATGCTGTCCGTGCGCGTAGCCGCGGCCGTGGCCCGCGCCCTTCCCCGGCGGGCCGGACTGGTCTCCAAAAATGCTTTGGG
ATCATCTTTTATTGCCGCAAGGAACCTTCATGCCTCTAACACGCGTCTTCAGAAGACTGGCACTGCTGAGATGTCCTCTA
TTCTTGAAGAGCGAATTCTTGGAGCTGATACCTCTGTTGACCTTGAAGAGACTGGGCGTGTCTTAAGTATTGGTGATGGT
ATTGCCCGAGTACACGGGCTTCGGAATGTTCAAGCAGAAGAAATGGTAGAGTTTTCCTCAGGCTTAAAGGGTATGTCTCT
GAACTTGGAGCCCGACAATGTTGGTGTTGTCGTGTTTGGGAATGATAAACTCATCAAGGAAGGAGATATTGTGAAGAGGA
CAGGTGCCATTGTGGATGTTCCAGTTGGTGAGGAGCTGTTGGGTCGTGTAGTAGATGCCCTTGGTAATGCCATTGATGGA
AAGGGTCCAATTGGTTCCAAGACTCGTAGGCGAGTTGGCCTGAAAGCCCCTGGAATCATTCCTCGAATCTCTGTGCGGGA
ACCAATGCAAACTGGCATTAAGGCTGTGGATAGCTTGGTGCCGATTGGTCGTGGTCAGCGTGAGCTGATTATTGGTGACA
GACAGACAGGGAAAACATCCATTGCTATTGACACAATTATTAATCAGAAACGTTTCAATGATGGAACTGATGAAAAAAAG
AAGCTGTACTGCATCTATGTTGCTATTGGTCAGAAGAGATCCACTGTTGCCCAGTTGGTGAAGAGACTGACAGATGCAGA
TGCCATGAAATACACCATTGTGGTGTCAGCTACTGCTTCGGATGCTGCCCCACTTCAGTACCTGGCTCCTTATTCTGGCT
GTTCTATGGGAGAGTACTTTAGAGATAACGGCAAGCATGCTTTGATCATCTATGACGACTTGTCCAAACAGGCTGTTGCT
TACCGCCAGATGTCGCTGTTGCTCCGCCGGCCCCCTGGTCGTGAGGCCTACCCTGGTGATGTGTTCTACCTACACTCCCG
GCTGCTGGAGAGAGCAGCCAAAATGAACGACTCTTTTGGTGGTGGCTCCTTGACTGCGTTACCAGTCATAGAAACACAGG
CTGGGGATGTGTCTGCTTACATTCCAACCAATGTCATTTCCATCACTGATGGACAGATCTTCTTGGAAACAGAATTGTTC
TATAAAGGTATCCGCCCTGCCATTAATGTGGGTTTGTCTGTGTCCCGTGTCGGATCTGCTGCCCAAACCAGAGCTATGAA
GCAGGTGGCAGGTACCATGAAGCTGGAATTGGCGCAGTATCGTGAGGTTGCTGCTTTTGCTCAGTTTGGTTCTGACCTTG
ACGCTGCCACTCAACAGCTCTTGAGTCGTGGTGTGCGTCTGACGGAGTTGCTGAAGCAAGGACAGTATTCTCCCATGGCT
ATTGAAGAACAAGTGGCTGTTATCTATGCGGGTGTGAGGGGGTACCTTGATAAATTGGAGCCCAGCAAGATCACAAAATT
TGAGAATGCTTTCTTGTCGCATGTTGTCAGCCAACATCAAGCCCTGTTGGGTAATATCAGGACTGACGGGAAGATCTCAG
AAGAGTCGGATGCCAAGCTGAAGGAGATTGTAACAAACTTCTTGGCTGGATTTGAAGCTTAA

Library Parental gene expression (RPM)
SRP017611_liver 267 .60 RPM
SRP017611_kidney 1031 .00 RPM
SRP017611_brain 605 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002507 ortholog_one2one 2 retrogenes
retro_btau_1380, retro_btau_1426,
Canis familiaris ENSCAFG00000017648 possible_ortholog 2 retrogenes
retro_cfam_1483, retro_cfam_516,
Dasypus novemcinctus ENSDNOG00000006331 ortholog_one2one 2 retrogenes
retro_dnov_1740, retro_dnov_2525,
Equus caballus ENSECAG00000021561 ortholog_one2one 1 retrogene
retro_ecab_788,
Macropus eugenii ENSMEUG00000009770 possible_ortholog 1 retrogene
retro_meug_151,
Meleagris gallopavo ENSMGAG00000009963 possible_ortholog 1 retrogene
retro_mgal_14,
Microcebus murinus ENSMICG00000017500 ortholog_one2one 1 retrogene
retro_mmur_1210,
Mustela putorius furo ENSMPUG00000000923 possible_ortholog 1 retrogene
retro_mputfur_601,
Sarcophilus harrisii ENSSHAG00000017177 possible_ortholog 1 retrogene
retro_shar_109,
Tursiops truncatus ENSTTRG00000005118 ortholog_one2one 1 retrogene
retro_ttru_159,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1235 98.19 100.00
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Download FASTA sequences of all ENSOCUG00000003967 retrocopies