Parental gene:

ATP5A1, ENSPPYG00000009130

Aliases:None
Description:ATP synthase subunit alpha, mitochondrial precursor [Source:RefSeq peptide;Acc:NP_001126846]
Organism:Orangutan (Pongo abelii)
Coordinates:18:58570353..58584578(-)


>ENSPPYG00000009130
ATGCTGTCCGTGCGAGTTGCTGCGGCCGTGGTCCGCGCCCTCCCTCGGCGGGCCGGACTGGTCTCCAGAAATGCTTTGGG
TTCATCTTTCATTGCTGCAAGGAACTTCCATGCCTCTAACACTCATCTTCAGAAGACTGGTAATGGGGAGATGTCCTCTA
TTCTTGAAGAGCGTATTCTTGGAGCTGATACCTCTGTTGACCTTGAAGAAACTGGGCGTGTCTTAAGTATTGGTGATGGT
ATTGCCCGCGTACATGGGCTGAGGAATGTTCAAGCAGAAGAAATGGTAGAGTTTTCTTCAGGCCTAAAGGGTATGTCCTT
GAACTTGGAACCTGACAATGTTGGTGTTGTCGTGTTTGGAAATGATAAACTAATTAAGGAAGGAGATATAGTGAAGAGGA
CAGGAGCCATTGTGGACGTTCCAGTTGGTGAGGAGCTGTTGGGTCGTGTAGTTGATGCCCTTGGTAATGCTATTGACGGA
AAGGGTCCAATCAGTTCCAAGACCCGTAGGCGAGTTGGTCTGAAAGCCCCTGGTATCATTCCTCGAATTTCAGTGCGGGA
ACCAATGCAGACTGGCATTAAGGCTGTGGATAGCTTGGTGCCAATTGGTCGTGGTCAGCGTGAGCTGATTATTGGTGACC
GACAGACTGGGAAAACCTCAATTGCCATTGACACAATCATTAACCAGAAACGTTTCAATGATGGATCTGATGAAAAGAAG
AAGCTGTACTGTATCTATGTTGCTATTGGTCAAAAGAGATCCACTGTTGCCCAGTTGGTGAAGAGACTTACAGATGCAGA
TGCCATGAAGTACACCATTGTGGTGTCAGCTACGGCCTCAGATGCTGCCCCACTTCAGTACCTGGCTCCTTACTCTGGCT
GTTCCATGGGAGAGTATTTTAGAGACAATGGCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGCTGTTGCT
TACCGTCAGATGTCTCTGTTGCTCCGCCGACCCCCTGGTCGTGAGGCCTATCCTGGTGATGTGTTCTACCTACACTCCCG
GTTGCTGGAGAGAGCAGCCAAAATGAACGATGCTTTTGGTGGTGGCTCCTTGACTGCTTTGCCAGTCATAGAAACACAGG
CTGGTGATGTGTCTGCTTACATTCCAACAAATGTCATTTCCATCACTGATGGACAGATCTTCTTGGAAACAGAATTGTTC
TACAAAGGTATCCGCCCTGCAATTAACGTTGGTCTGTCTGTGTCTCGTGTCGGATCCGCTGCCCAAACCAGGGCTATGAA
GCAGGTGGCAGGTACTATGAAGCTGGAATTGGCTCAGTATCGTGAGGTTGCTGCTTTTGCCCAGTTCGGTTCTGACCTCG
ATGCTGCCACTCAACAACTTTTGAGTCGTGGCGTGCGTCTAACTGAGTTGCTGAAGCAAGGACAGTATTCTCCCATGGCT
ATTGAAGAACAAGTGGCTGTTATCTATGCGGGTGTAAGGGGGTATCTTGATAAACTGGAGCCCAGCAAGATTACAAAGTT
TGAGAATGCTTTCTTGTCTCATGTCGTCAGCCAGCACCAAGCCTTGTTGGGCACTATCAGGGCTGATGGAAAGATCTCAG
AACAATCAGATGCAAAGCTGAAAGAGATTGTAACAAACTTCTTGGCTGGATTTGAAGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 343 .80 RPM
SRP007412_cerebellum 283 .94 RPM
SRP007412_heart 1006 .12 RPM
SRP007412_kidney 514 .77 RPM
SRP007412_liver 194 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002507 ortholog_one2one 2 retrogenes
retro_btau_1380, retro_btau_1426,
Canis familiaris ENSCAFG00000017648 possible_ortholog 2 retrogenes
retro_cfam_1483, retro_cfam_516,
Dasypus novemcinctus ENSDNOG00000006331 ortholog_one2one 2 retrogenes
retro_dnov_1740, retro_dnov_2525,
Equus caballus ENSECAG00000021561 ortholog_one2one 1 retrogene
retro_ecab_788,
Homo sapiens ENSG00000152234 ortholog_one2one 1 retrogene
retro_hsap_1702,
Gorilla gorilla ENSGGOG00000016560 ortholog_one2one 1 retrogene
retro_ggor_1275,
Meleagris gallopavo ENSMGAG00000009963 possible_ortholog 1 retrogene
retro_mgal_14,
Microcebus murinus ENSMICG00000017500 ortholog_one2one 1 retrogene
retro_mmur_1210,
Myotis lucifugus ENSMLUG00000009856 ortholog_one2one 1 retrogene
retro_mluc_1198,
Macaca mulatta ENSMMUG00000003570 ortholog_one2one 1 retrogene
retro_mmul_1208,
Mustela putorius furo ENSMPUG00000000923 possible_ortholog 1 retrogene
retro_mputfur_601,
Nomascus leucogenys ENSNLEG00000010973 ortholog_one2one 1 retrogene
retro_nleu_1334,
Pan troglodytes ENSPTRG00000009991 ortholog_one2one 1 retrogene
retro_ptro_1151,
Sarcophilus harrisii ENSSHAG00000017177 possible_ortholog 1 retrogene
retro_shar_109,
Tarsius syrichta ENSTSYG00000007804 ortholog_one2one 1 retrogene
retro_tsyr_1186,
Tursiops truncatus ENSTTRG00000005118 ortholog_one2one 1 retrogene
retro_ttru_159,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1363 87.07 52.80
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Download FASTA sequences of all ENSPPYG00000009130 retrocopies