RetrogeneDB ID: retro_mluc_2595

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431367:36816..37623(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028810
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CAPZA2
• Ensembl ID: ENSMLUG00000007910
• Aliases: None
• Description: None

Sequence

>retro_mluc_2595
GCAGCAAAATTCATCATACATGCCTCTCCTAGAGATATAATGAGGTGTTTGATGATGTCCGGTTGCTGCTTAATAATGAT
AATCTTCTCAGGGAAGGAGCAGCCCAAGCATTTGCACAATATAACTTGGACCAGTTACTCCAGTAAAAATTGAAGGTGAT
GAAGATCAGGTATCGATAACAAAACATGGCGACTTGAGAAATGGAAAGTTTTCGGATCCAGAAAAACAGAATCTGTTTCA
AATTTGATCACTTTAGAAAGGAAGCGACTGATCCAAGACCGTATGAAGCAGAGAATGCAATTGAATCATGGAGAACTTGA
GTAGAAACGGCTCTGCGAGCTTACGTAAAAGAACATATCCGCATGGGGTCTGTACTGTATGTGGTGAAAAATATATGGAC
AGCAAACCATTATTGCATGCACAGAGAGCCATCAGTTCCAAGCAAAAAACTTTTGGAATGGTCATTGGAGGTCAGAGTGG
AAGTTTACAATCACTCCTTCAACCACTCAAGTGGTTGGCATCTTGAAATTTCAGGTTCATTATTATGAAGATGGTAATGT
TCAGCTAGTGAGTCATAAAGATATGCACGATTCCCTCACAGTGTCTAATGAGGTGCAAACAGCAAAAGAATTTATAAAGA
TTGTAGAAGCTTCAGAAAATGAATGCCAGGCTGACATCAGTGAGAACTTTCAGACCATGTCGGACACTACTGTCAAAGCC
TTATGTCGACAGTTGCCAGTTACACGCACTCAGATTGATTGGAACAAGGCCCTCAGCTGCAAGCTTGGCAAAGAGATGCA
GAATGCA

Alignment

ORF - retro_mluc_2595 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.45 %
• Parental protein coverage: 94.74 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  AAKFIIHAPPGE-FNEVFNDVRLLLNNDNLLREGAAHAFAQYNLDQF-TPVKIEGYEDQVLITEHGDVGN
          AAKFIIHA.P....NEVF.DVRLLLNNDNLLREGAA.AFAQYNLDQ..TPVKIEG.EDQV.IT.HGD..N
Retrocopy AAKFIIHASPRD<YNEVFDDVRLLLNNDNLLREGAAQAFAQYNLDQL<TPVKIEGDEDQVSITKHGDLRN

Parental  GKFLDP-KNRICFKFDHLRKEATDPRPYEAENAIESWRTSVETALRAYVKEH-YPNGVCTVYGKK-IDGQ
          GKF.DP.KNRICFKFDH.RKEATDPRPYEAENAIESWRT.VETALRAYVKEH.YP.GVCTV.G.K.I.GQ
Retrocopy GKFSDP>KNRICFKFDHFRKEATDPRPYEAENAIESWRT*VETALRAYVKEH<YPHGVCTVCGEK<IYGQ

Parental  QTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNE
          QTIIAC.ESHQFQAKNFWNG.WRSEWKFTITPSTTQVVGILK.QVHYYEDGNVQLVSHKD..DSLTVSNE
Retrocopy QTIIACTESHQFQAKNFWNGHWRSEWKFTITPSTTQVVGILKFQVHYYEDGNVQLVSHKDMHDSLTVSNE

Parental  VQTAKEFIKIVEAAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQNA
          VQTAKEFIKIVEA.ENE.Q..ISEN.QTMSDTT.KAL.RQLPVTRT.IDWNK.LS.K.GKEMQNA
Retrocopy VQTAKEFIKIVEASENECQADISENFQTMSDTTVKALCRQLPVTRTQIDWNKALSCKLGKEMQNA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2595 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000004925	2 retrocopies	retro_chof_2296, retro_chof_680,
Cavia porcellus	ENSCPOG00000007677	1 retrocopy	retro_cpor_205,
Dasypus novemcinctus	ENSDNOG00000005771	1 retrocopy	retro_dnov_1892,
Dipodomys ordii	ENSDORG00000016226	1 retrocopy	retro_dord_266,
Erinaceus europaeus	ENSEEUG00000009063	5 retrocopies	retro_eeur_142, retro_eeur_167, retro_eeur_351, retro_eeur_365, retro_eeur_482,
Echinops telfairi	ENSETEG00000019711	3 retrocopies	retro_etel_1516, retro_etel_2020, retro_etel_442,
Gorilla gorilla	ENSGGOG00000012158	1 retrocopy	retro_ggor_1774,
Microcebus murinus	ENSMICG00000000707	1 retrocopy	retro_mmur_1224,
Myotis lucifugus	ENSMLUG00000007910	1 retrocopy	retro_mluc_2595 ,
Myotis lucifugus	ENSMLUG00000009796	1 retrocopy	retro_mluc_2483,
Oryctolagus cuniculus	ENSOCUG00000003591	2 retrocopies	retro_ocun_1531, retro_ocun_873,
Pongo abelii	ENSPPYG00000017933	1 retrocopy	retro_pabe_1321,
Sus scrofa	ENSSSCG00000026942	2 retrocopies	retro_sscr_1127, retro_sscr_600,
Ictidomys tridecemlineatus	ENSSTOG00000024828	1 retrocopy	retro_itri_1561,
Tupaia belangeri	ENSTBEG00000012657	2 retrocopies	retro_tbel_2004, retro_tbel_2228,