Parental gene:

CAPZA2, ENSOCUG00000003591

Aliases:None
Description:F-actin-capping protein subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q09YN4]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:7:28321421..28391314(-)


>ENSOCUG00000003591
ATGGCGGATCTGGAGGAGCAGTTGTCTGATGAGGAGAAGGTGCGTATAGCAGCAAAATTCATCATCCATGCCCCTCCTGG
AGAATTTAATGAGGTATTTAATGATGTCCGGTTACTGCTTAATAATGATAATCTTCTCAGGGAAGGAGCAGCACATGCAT
TTGCACAGTATAACTTGGACCAGTTTACTCCAGTAAAAATTGAAGGTTATGAAGATCAGGTATTGATAACAGAACATGGC
GACTTGGGGAATGGAAAGTTTTTGGATCCAAAAAACAGAATTTGTTTCAAATTTGATCACTTGAGAAAGGAAGCAACTGA
TCCCAGACCCTATGAAGCAGAAAATGCGATTGAATCGTGGAGAAGTTCAGTAGAAACTGCTCTTCGTGCTTATGTAAAAG
AACATTATCCGAATGGGGTCTGCACTGTATATGGTAAAAAAATTGATGGACAGCAAACCATTATTGCATGCATAGAAAGC
CATCAGTTCCAAGCAAAAAACTTTTGGAATGGTCGTTGGAGGTCAGAGTGGAAGTTTACAGTCACACCTTCAATCACTCA
AGTGGTTGGCATCTTGAAAATTCAGGTTCATTATTATGAAGATGGTAATGTTCAGCTAGTGAGTCATAAAGATATACAAG
ATTCCCTAACAGTGTCTAATGAGGCACAAACAGCAAAAGAATTTATAAAAATTGTAGAAGCTGCAGAAAATGAGTACCAG
ACTGCCATCAGTGAGAATTATCAGACAATGTCGGACACTACTTTCAAAGCCTTACGTCGACAGTTGCCAGTTACACGCAC
TAAGATTGATTGGAACAAGATCCTTAGCTACAAGATTGGCAAAGAGATGCAGAATGCATAA

Library Parental gene expression (RPM)
SRP017611_liver 12 .95 RPM
SRP017611_kidney 60 .71 RPM
SRP017611_brain 71 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004925 ortholog_one2one 2 retrogenes
retro_chof_2296, retro_chof_680,
Cavia porcellus ENSCPOG00000007677 ortholog_one2one 1 retrogene
retro_cpor_205,
Dasypus novemcinctus ENSDNOG00000005771 ortholog_one2one 1 retrogene
retro_dnov_1892,
Dipodomys ordii ENSDORG00000016226 ortholog_one2one 1 retrogene
retro_dord_266,
Erinaceus europaeus ENSEEUG00000009063 ortholog_one2one 5 retrogenes
retro_eeur_142, retro_eeur_167, retro_eeur_351, retro_eeur_365, retro_eeur_482,
Echinops telfairi ENSETEG00000019711 ortholog_one2one 3 retrogenes
retro_etel_1516, retro_etel_2020, retro_etel_442,
Gorilla gorilla ENSGGOG00000012158 ortholog_one2one 1 retrogene
retro_ggor_1774,
Microcebus murinus ENSMICG00000000707 ortholog_one2one 1 retrogene
retro_mmur_1224,
Myotis lucifugus ENSMLUG00000007910 ortholog_one2one 1 retrogene
retro_mluc_2595,
Oryctolagus cuniculus ENSOCUG00000000270 within_species_paralog 6 retrogenes
retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Pongo abelii ENSPPYG00000017933 ortholog_one2one 1 retrogene
retro_pabe_1321,
Sus scrofa ENSSSCG00000026942 ortholog_one2many 2 retrogenes
retro_sscr_1127, retro_sscr_600,
Ictidomys tridecemlineatus ENSSTOG00000024828 ortholog_one2one 1 retrogene
retro_itri_1561,
Tupaia belangeri ENSTBEG00000012657 ortholog_one2one 2 retrogenes
retro_tbel_2004, retro_tbel_2228,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_873 76.32 52.45
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ocun_1531 67.95 53.85
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSOCUG00000003591 retrocopies