Parental gene:

CAPZA2, ENSCPOG00000007677

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_11:38266663..38309884(+)


>ENSCPOG00000007677
ACATCTGACATAAATAAATGCTTTTCAGATGAAGAAAAGGTACGTATAGCTGCAAAATTCATCATTCATGCCCCTCCTGG
AGAGTTTAATGAGGTTTTTAATGATGTTCGGTTATTGCTTAATAATGATAATCTCCTCAGGGAGGGAGCAGCCCATGCAT
TTGCACAGTATAACTTGGATCAGTTTACTCCGGTAAAAATTGAAGGTTATGAAGATCAGGTATTGATAACAGAACATGGT
GATTTGGGAAATGGAAAGTTTTTGGATCCAAAAAACAGAATTTGTTTCAAATTTGATCACTTAAGAAAGGAAGCAACTGA
TCCAAGACCCTACGAAGCAGAAAATGCAATTGAATCATGGAGAACTTCTGTAGAAACTGCGCTGCGAGCATACGTAAAAG
AACATTATCCGAACGGAGTTTGCACTACCAATAAGGTGTATGGTAAAAAAATAGATGGACAGCAAACCATTATTGCATGC
ATAGAAAGCCATCAATTCCAAGCAAAAAATTTTTGGAATGGTCGTTGGAGATCAGAGTGGAAGTTTACAATCACACCTTC
AACCACTCAGGTGGTTGGCATCTTGAAAATTCAGGTTCATTATTATGAAGATGGTAATGTTCAGCTAGTGAGTCATAAAG
ATATACTGGATTCCCTAACAGTGTCTAATGAAGCGCAAACAGCAAAAGAATTTATAAAGATTGTAGAAGCTGCAGAAAAT
GAATACCAGACTGCCATCAGTGAGAATTATCAGACAATGTCGGACACTACTTTCAAAGCCTTACGTCGACAGTTGCCAGT
TACACGTACTAAGATTGATTGGAACAAGATCCTTAGCTACAAGATTGACTTTGAATATTGTAATTCTTAA

Library Parental gene expression (RPM)
SRP017611_liver 39 .74 RPM
SRP017611_kidney 41 .56 RPM
SRP017611_brain 52 .97 RPM
SRP040447_lung 46 .23 RPM
SRP040447_skeletal_muscle 79 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004925 ortholog_one2one 2 retrogenes
retro_chof_2296, retro_chof_680,
Cavia porcellus ENSCPOG00000014532 within_species_paralog 1 retrogene
retro_cpor_1155,
Dasypus novemcinctus ENSDNOG00000005771 ortholog_one2one 1 retrogene
retro_dnov_1892,
Dipodomys ordii ENSDORG00000016226 ortholog_one2one 1 retrogene
retro_dord_266,
Erinaceus europaeus ENSEEUG00000009063 ortholog_one2one 5 retrogenes
retro_eeur_142, retro_eeur_167, retro_eeur_351, retro_eeur_365, retro_eeur_482,
Echinops telfairi ENSETEG00000019711 ortholog_one2one 3 retrogenes
retro_etel_1516, retro_etel_2020, retro_etel_442,
Gorilla gorilla ENSGGOG00000012158 ortholog_one2one 1 retrogene
retro_ggor_1774,
Microcebus murinus ENSMICG00000000707 ortholog_one2one 1 retrogene
retro_mmur_1224,
Myotis lucifugus ENSMLUG00000007910 ortholog_one2one 1 retrogene
retro_mluc_2595,
Oryctolagus cuniculus ENSOCUG00000003591 ortholog_one2one 2 retrogenes
retro_ocun_1531, retro_ocun_873,
Pongo abelii ENSPPYG00000017933 ortholog_one2one 1 retrogene
retro_pabe_1321,
Sus scrofa ENSSSCG00000026942 ortholog_one2many 2 retrogenes
retro_sscr_1127, retro_sscr_600,
Ictidomys tridecemlineatus ENSSTOG00000024828 ortholog_one2one 1 retrogene
retro_itri_1561,
Tupaia belangeri ENSTBEG00000012657 ortholog_one2one 2 retrogenes
retro_tbel_2004, retro_tbel_2228,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_205 87.50 98.92
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Download FASTA sequences of all ENSCPOG00000007677 retrocopies