RetrogeneDB ID: retro_mluc_1960

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429963:2147190..2147606(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023561
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000024459
• Aliases: None
• Description: None

Sequence

>retro_mluc_1960
GTTGAGTGGCACTGGGTGGCTCCAGTGTCCTGTGCCAAATCTAATGAGGTTAATGTGCTGCCAAGTACAGGCAATGGAAA
CATGAAGCCGGTGGTGTTCAGTACGCCTCTGGTGGACTTCCTGATGCAGCTGGAGTATTACATGCCTACAATCCTAGTGC
AGTGACTGGTTACTACCTGGACCCTGCTGGCTTTGAGACCTCAGATCCTTGCATAACTTGGCTCATCTCCCTAGCTGCTC
AGAAATTCATCTCAGATATTGTCAATGATGCACTACAGCAATGCAAAATGAAGGGTACAGCCTTTGGCAGCTCCCAAAGC
AAGAGCAAGGACCACAGGTACACTCTCACCATGGAGGACTTGACCCCTGCCCTCAATGAGTATGGCATCCATGTAAAGAA
GCCACACTATTTCACC

Alignment

ORF - retro_mluc_1960 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.5 %
• Parental protein coverage: 96.53 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VEGGRAGPMSPNMSNGVYVLPSAAT-DVKPVVSSTPLVDFLMQLEDYTPTI-PDAGTGYYLNRAGFEASD
          VE.....P.S...SN.V.VLPS......KPVV.STPLVDFLMQLE.Y.PTI.P.A.TGYYL..AGFE.SD
Retrocopy VEWHWVAPVSCAKSNEVNVLPSTGNGNMKPVVFSTPLVDFLMQLEYYMPTI<PSAVTGYYLDPAGFETSD

Parental  PRILNRLISLAAPKFISDIANDALQHCKMKGTASGSSRSKSKDRKYTLTMEDLTPALSEYGINVKNLHEL
          P.I...LISLAA.KFISDI.NDALQ.CKMKGTA.GSS.SKSKD..YTLTMEDLTPAL.EYGI.VK..H..
Retrocopy PCI-TWLISLAAQKFISDIVNDALQQCKMKGTAFGSSQSKSKDHRYTLTMEDLTPALNEYGIHVKKPHYF

Parental  T
          T
Retrocopy T

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1960 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016278	2 retrocopies	retro_amel_1088, retro_amel_297,
Canis familiaris	ENSCAFG00000006498	2 retrocopies	retro_cfam_1041, retro_cfam_992,
Dasypus novemcinctus	ENSDNOG00000000814	1 retrocopy	retro_dnov_592,
Equus caballus	ENSECAG00000007794	1 retrocopy	retro_ecab_525,
Erinaceus europaeus	ENSEEUG00000008412	3 retrocopies	retro_eeur_542, retro_eeur_692, retro_eeur_709,
Echinops telfairi	ENSETEG00000008886	1 retrocopy	retro_etel_2090,
Felis catus	ENSFCAG00000015390	1 retrocopy	retro_fcat_1458,
Loxodonta africana	ENSLAFG00000029330	1 retrocopy	retro_lafr_750,
Macropus eugenii	ENSMEUG00000008216	2 retrocopies	retro_meug_1645, retro_meug_992,
Myotis lucifugus	ENSMLUG00000024459	1 retrocopy	retro_mluc_1960 ,
Macaca mulatta	ENSMMUG00000007743	1 retrocopy	retro_mmul_1144,
Mus musculus	ENSMUSG00000043866	1 retrocopy	retro_mmus_35,
Tursiops truncatus	ENSTTRG00000004894	1 retrocopy	retro_ttru_1113,