Parental gene: | TAF10, ENSEEUG00000008412 |
| Aliases: | None |
| Description: | TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa [Source:HGNC Symbol;Acc:11543] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_3606:49059..50260(-) |
>ENSEEUG00000008412
GGCTCTGGCGCGGACCCCGAGGGGGCGCCGGCCTCTGCCGTGTGGGGCCCAGGCCCGGCGCCCGCGGTCTCGACTCCCGC
CGCACTGCCTGCAGGCACCGCTGCAGAGAACAAGGCCAGCCCCGCGGGGACACCCGGGGGGCCCGGGACCGGAGCCGCGG
CGGGGGGCGCGGGACCTGTGGCGGCGCGGGCCGGGGAGCCTGCGGAGCGGCGCGGGGCGGCTCCGGTGTCTGCGGGCGGC
GCGGCGCCCCCCGAGGGGGCCTTGTCTAATGGCGTCTACGTGCTGCCGAGCGCGGCCAACGGCGACGTGAAGCCGGTGGT
GTCCAGCACGCCGCTGGTGGACTTCTTGATGCAGCTGGAGGACTACACGCCTACGATCCCAGATGCAGTGACTGGCTACT
ACTTGAACCGCGCAGGCTTTGAGGCTTCAGACCCACGCATAATACGGCTCATCTCCCTAGCTGCCCAGAAATTCATCTCA
GATATTGCCAATGATGCCCTTCAGCACTGCAAAATGAAGGGCACAGCCTCTGGCAGCTCCCGAAGCAAAAGCAAGGACCG
CAAGTACACTCTAACCATGGAGGACTTGACCCCTGCCCTCAGCGAGTATGGGATCAATGTGAAGAAGCCGCACTACTTCA
CCTGA
GGCTCTGGCGCGGACCCCGAGGGGGCGCCGGCCTCTGCCGTGTGGGGCCCAGGCCCGGCGCCCGCGGTCTCGACTCCCGC
CGCACTGCCTGCAGGCACCGCTGCAGAGAACAAGGCCAGCCCCGCGGGGACACCCGGGGGGCCCGGGACCGGAGCCGCGG
CGGGGGGCGCGGGACCTGTGGCGGCGCGGGCCGGGGAGCCTGCGGAGCGGCGCGGGGCGGCTCCGGTGTCTGCGGGCGGC
GCGGCGCCCCCCGAGGGGGCCTTGTCTAATGGCGTCTACGTGCTGCCGAGCGCGGCCAACGGCGACGTGAAGCCGGTGGT
GTCCAGCACGCCGCTGGTGGACTTCTTGATGCAGCTGGAGGACTACACGCCTACGATCCCAGATGCAGTGACTGGCTACT
ACTTGAACCGCGCAGGCTTTGAGGCTTCAGACCCACGCATAATACGGCTCATCTCCCTAGCTGCCCAGAAATTCATCTCA
GATATTGCCAATGATGCCCTTCAGCACTGCAAAATGAAGGGCACAGCCTCTGGCAGCTCCCGAAGCAAAAGCAAGGACCG
CAAGTACACTCTAACCATGGAGGACTTGACCCCTGCCCTCAGCGAGTATGGGATCAATGTGAAGAAGCCGCACTACTTCA
CCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 22 .03 RPM |
| SRP017611_kidney | 31 .13 RPM |
| SRP017611_brain | 9 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000006498 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000000814 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000007794 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000008886 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000015390 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000008216 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000024459 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007743 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000043866 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000004894 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_542 | 67.04 | 81.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_692 | 84.62 | 54.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_709 | 84.75 | 54.21 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000008412 retrocopies