RetrogeneDB ID: retro_mluc_1582

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429865:4498898..4499369(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCNC
• Ensembl ID: ENSMLUG00000012815
• Aliases: None
• Description: None

Sequence

>retro_mluc_1582
AAGGAATTTTCTTATAGGATGAACCATATATTAGAATTTGAATTCTATATTTTAGAACTAATGGATTTTTGCTTGATAGT
GTAACACCTTATAGACCTTTGCTCCAGTATGTGCAGGGTATAGGTCAAGAAGACATGTTGCTTCCCTTTGCATGGAGGAT
AGTGAATGATACCTACAGAATGGATTTTACCTACTGTATCTCCTTTCATGATAGCTTTAGCTTGTCTACATGTAGCCTGT
GTTGTACAGCAGGAAGATACCAGATAGTAGTTTTCTGAGCTTTCTGTGGATATAGAGAAAATTTTAGAAATAATCAAGGT
TATTTTAAAACTATATGAATTGTGAAAGAATTTTGATGAGAGAAAAGAGATGGCAACTATTCTTAGCAAGATGCCAAAAC
CCAAACCTCATCCGAACAGTGAAGGATAGCAGAATCCAAATGGAAGTCAGAATTCTAGCTACAGCCAATCT

Alignment

ORF - retro_mluc_1582 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.23 %
• Parental protein coverage: 55.83 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  KEFPYRMNHILECEFYLLELMDCCLIVYH-PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLC-LLY-
          KEF.YRMNHILE.EFY.LELMD.CLIV.H.PYRPLLQYVQ..GQEDMLLP.AWRIVNDTYR.D...LLY.
Retrocopy KEFSYRMNHILEFEFYILELMDFCLIV*H<PYRPLLQYVQGIGQEDMLLPFAWRIVNDTYRMDFT<LLY<

Parental  PPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKP
          .PFMIALACLHVACVVQQ.D.R..F.ELSVD.EKILEII.VILKLYE..KNFDERKEMATILSKMPKPKP
Retrocopy SPFMIALACLHVACVVQQEDTR**FSELSVDIEKILEIIKVILKLYEL*KNFDERKEMATILSKMPKPKP

Parental  PPNSEGEQGPNGSQNSSYSQS
          .PNSEG.Q.PNGSQNSSYSQS
Retrocopy HPNSEG*QNPNGSQNSSYSQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1582 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008954	1 retrocopy	retro_amel_1828,
Canis familiaris	ENSCAFG00000003525	1 retrocopy	retro_cfam_1774,
Dasypus novemcinctus	ENSDNOG00000011999	3 retrocopies	retro_dnov_1153, retro_dnov_216, retro_dnov_2243,
Dipodomys ordii	ENSDORG00000008393	2 retrocopies	retro_dord_230, retro_dord_75,
Myotis lucifugus	ENSMLUG00000010910	2 retrocopies	retro_mluc_1284, retro_mluc_424,
Myotis lucifugus	ENSMLUG00000012493	1 retrocopy	retro_mluc_313,
Myotis lucifugus	ENSMLUG00000012815	1 retrocopy	retro_mluc_1582 ,
Oryctolagus cuniculus	ENSOCUG00000003309	2 retrocopies	retro_ocun_1753, retro_ocun_888,
Ochotona princeps	ENSOPRG00000012972	2 retrocopies	retro_opri_1026, retro_opri_151,
Sus scrofa	ENSSSCG00000004353	1 retrocopy	retro_sscr_760,
Tupaia belangeri	ENSTBEG00000017525	1 retrocopy	retro_tbel_677,