RetrogeneDB ID: retro_mluc_1284

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429814:1345255..1346498(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCNT1
• Ensembl ID: ENSMLUG00000010910
• Aliases: None
• Description: None

Sequence

>retro_mluc_1284
ATGGAGGAAGAGAGAGAGAACGACAAACAGTGGTATTTTACGCGGGAAGAGCTGGAAAATAGCCCATCTCGTTACTTTGG
GCTGGACCCAGATAAAGAACTTTCTTGTCGCCAGCAAGCGGCCAATCTGCTCCAGCACATGGGGCAACGTCTTCATGTCT
CACAATTGACTATCAACACCGCTATAGTATACATGCAGCGATTCTACATGGCCCACTCCTTCACACAGTTCCATGGATAC
ACTGTGGCTCCAGCGGCCTTATTTCTAGCAGCTAAAGTAGAGGACCAGCCCCAAAAATCGGAGCACGTCATCAAGGTAGC
ACATGCTTGTCTCCATCCGCAGGAGTCACTTCCTGATACCAGGAGTGAGGCTTACCTGCAACAAGTTGAAGATCTGCTGA
CATTAGAAAGCTTACTTCTGCAGACTTTAGGCTCTGAACTAACAATTGATCACCCACATATACATGTGCTAAAGTGCATG
CAACTTGTTGGAGCAAGCAAGGACTTAGCACAGGCTTCTTACCTCATGGCAACCAACAGCCTGCATTTGACCACATTTAG
CCTGCAGTACACACCTCCAGTAGTGGCCTGTGTCTGCATTTATCTGGCTTGCAAGTGGTCCAACTGGGAGATCCCAGTCT
CATCTGAGGGGAAGCACTGGTGGGAGTATGTTGACGCCACTGTGACCTTGGGACTTTTAGATGAACTGACACATGAATTT
CTACGGATTCTGGAGGAAACCGTCAAGAGGCTCACACGTACTCAGAATTGGAGGGCGTGCCCGTCTGCCTCGAAAACAAA
AGCAGCACACTGAGGAGCAGAGGCAAAACCGTCAGAGCTGACAGTCCTCAATGTGATTTCCCAAAGCTCTTCAGACACAA
CTATTGCAGGTTTAAGAAGCACGCCAACCTCGTCTACCACAAGTTCAGTGCCTTCCCTTCCAACCACTGAAGAGTCATCC
AGCAACGTAAGCAGTGTGGACATATTGCGGGGTGAGCGCTGGCTGTCCTCCCAACCTTCTTTCAAACTAGAACCTGCTCG
GGGTCATTGGACTAGTGAGAATGTAGCCCTTACAGGAGCTGGTCATTCCTTGAAGCAGGATAGTCCAAATGCATTTATTT
CCCAGAAGCAGAACAAGCAAGAGTGTGCCCTCAGCTAAAGTGTCACTGAAAGAATACCGTGCAAAGCATGCAGAAGAGTT
GGCTGCCCAGAAGAGGCAACTGGAGGAGGTGGACAAAACAGTT

Alignment

ORF - retro_mluc_1284 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.13 %
• Parental protein coverage: 57.08 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MEEERKNNKRWYFTREQLENSPSRRFGLDPDKELSYRQQAANLLQDMGQRLYMSSQLTINTAIVYMHRFY
          MEEER.N.K.WYFTRE.LENSPSR.FGLDPDKELS.RQQAANLLQ.MGQRL..S.QLTINTAIVYM.RFY
Retrocopy MEEERENDKQWYFTREELENSPSRYFGLDPDKELSCRQQAANLLQHMGQRLHVS-QLTINTAIVYMQRFY

Parental  MIQSFTQFHRYTVAPAALFLAAKVEEQPKKLEHVIKVAHACLHPQESLPDTRSEAYLQQVQDLVILESII
          M..SFTQFH.YTVAPAALFLAAKVE.QP.K.EHVIKVAHACLHPQESLPDTRSEAYLQQV.DL..LES..
Retrocopy MAHSFTQFHGYTVAPAALFLAAKVEDQPQKSEHVIKVAHACLHPQESLPDTRSEAYLQQVEDLLTLESLL

Parental  LQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNW
          LQTLG.ELTIDHPH.HV.KC.QLV.ASKDLAQ.SY.MATNSLHLTTFSLQYTPPVVACVCI.LACKWSNW
Retrocopy LQTLGSELTIDHPHIHVLKCMQLVGASKDLAQASYLMATNSLHLTTFSLQYTPPVVACVCIYLACKWSNW

Parental  EIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRIRNWRACPAATKTKAADRGAEANTSE
          EIPVS..GKHWWEYVDATVTL.LLDELTHEFL.ILE.T..RL.R..NWRACP.A.KTKAA..GAEA..SE
Retrocopy EIPVSSEGKHWWEYVDATVTLGLLDELTHEFLRILEETVKRLTRTQNWRACPSASKTKAAH*GAEAKPSE

Parental  QTILNMISQSSSDTTIAGLMSMSTSSTTSSVPSLPTTEESSSNISSVDILQGERWLSSQPSFKLEPAQGH
          .T.LN.ISQSSSDTTIAGL.S..TSSTTSSVPSLPTTEESSSN.SSVDIL.GERWLSSQPSFKLEPA.GH
Retrocopy LTVLNVISQSSSDTTIAGLRSTPTSSTTSSVPSLPTTEESSSNVSSVDILRGERWLSSQPSFKLEPARGH

Parental  RTSENVALIGADHSLQQDSSNAFISQKQN-SKSVPSAKVSLKEYRAKHAEELAAQKRQLENMEANV
          .TSENVAL.GA.HSL.QDS.NAFISQKQN.SKSVPSAKVSLKEYRAKHAEELAAQKRQLE.....V
Retrocopy WTSENVALTGAGHSLKQDSPNAFISQKQN>SKSVPSAKVSLKEYRAKHAEELAAQKRQLEEVDKTV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1284 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010910	2 retrocopies	retro_mluc_1284 , retro_mluc_424,
Myotis lucifugus	ENSMLUG00000012493	1 retrocopy	retro_mluc_313,
Myotis lucifugus	ENSMLUG00000012815	1 retrocopy	retro_mluc_1582,