RetrogeneDB ID: retro_mluc_1445

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429839:4901128..4901335(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PCBD2
• Ensembl ID: ENSMLUG00000012638
• Aliases: None
• Description: None

Sequence

>retro_mluc_1445
GATGCCATCCACAAACAGTTCTTCAAAAATTTCAATCAGGCATTTGGCTTTCTGTCTCGAGTTGCCCTATAAGCAGAAAA
AATAAGTCACTGGGAATGGTTCAATGTATACAAAAAAGCCCAGATCACTCTCACCTCACATGGCTGTGGTGGACTGACCA
AAAGAGGCGTGAAACTGGCCACGTTTATTGAAAAAGCAGCGGCTTCC

Alignment

ORF - retro_mluc_1445 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.06 %
• Parental protein coverage: 69.61 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFNAYNKVQITLTSHDCGQLTKRDVKLAKFIEKAAA
          .AI.K.F.FKNFNQAFGF.SRVAL.AEK..H..EWFN.Y.K.QITLTSH.CG.LTKR.VKLA.FIEKAAA
Retrocopy DAIHKQF-FKNFNQAFGFLSRVAL*AEKISHW-EWFNVYKKAQITLTSHGCGGLTKRGVKLATFIEKAAA

Parental  S
          S
Retrocopy S

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1445 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000019125	2 retrocopies	retro_dnov_645, retro_dnov_660,
Equus caballus	ENSECAG00000015810	2 retrocopies	retro_ecab_489, retro_ecab_871,
Erinaceus europaeus	ENSEEUG00000007051	1 retrocopy	retro_eeur_190,
Echinops telfairi	ENSETEG00000016658	2 retrocopies	retro_etel_1252, retro_etel_75,
Macropus eugenii	ENSMEUG00000003784	1 retrocopy	retro_meug_1185,
Myotis lucifugus	ENSMLUG00000012638	1 retrocopy	retro_mluc_1445 ,
Myotis lucifugus	ENSMLUG00000016074	3 retrocopies	retro_mluc_1534, retro_mluc_2459, retro_mluc_462,
Monodelphis domestica	ENSMODG00000014351	1 retrocopy	retro_mdom_1369,
Pteropus vampyrus	ENSPVAG00000000384	2 retrocopies	retro_pvam_63, retro_pvam_750,
Tursiops truncatus	ENSTTRG00000016874	3 retrocopies	retro_ttru_1135, retro_ttru_359, retro_ttru_511,