RetrogeneDB ID:

retro_ttru_359

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1981:316485..316867(+)
Located in intron of:ENSTTRG00000007360
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PCBD2
Ensembl ID:ENSTTRG00000016874
Aliases:None
Description:pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 [Source:HGNC Symbol;Acc:24474]


Retrocopy-Parental alignment summary:






>retro_ttru_359
GCAGCGCTGCTGGGGCCGAGGGCGGCACAGCGCTGGTTCCGGACGCGGTGGGGCAGGAGCCGTGCCTCGCGGCCATGTCA
GCAGGTGCTCACTGGTGGACCGCAGAGGAGAGGAACCGAGTTGTGCTTGACCTGAAAGCAGCAGGATGGCTGGAATTAAG
TGAGAGAGATTCCATCTACAAAGAGTTCTCTTTCAAAAATTTTAATCAGGCATTTGGCCTTATGTCCGGAGTTACCCTGC
AAGCAGAGAAGATGAATCATCACCTGGAGTGGTTCAATGGGTACAGCAACGTCCAGATAACTCTAACATCGCATGACTGT
GGAGTGCTGACCAAAAGAATGTGAAACTGGCCAAGTGTATTGAAAAAGCAGCAGCTTCTGTG

ORF - retro_ttru_359 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.86 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAAALGARGATRRWFAALRGRSQS-LAAMSADAHWLTAEERNQVILDLKAAGWSELSERDAIYKEFSFKNF
AA.LG.R.A..RWF....GRS...LAAMSA.AHW.TAEERN.V.LDLKAAGW.ELSERD.IYKEFSFKNF
RetrocopyAALLGPRAA-QRWFRTRWGRSRA<LAAMSAGAHWWTAEERNRVVLDLKAAGWLELSERDSIYKEFSFKNF
ParentalNQAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSHDCGGLTKR-DVKLAKFIEKAAASV
NQAFG.MS.V.LQAEKMNHH.EWFN.Y..VQITLTSHDCG.LTKR..VKLAK.IEKAAASV
RetrocopyNQAFGLMSGVTLQAEKMNHHLEWFNGYSNVQITLTSHDCGVLTKR<NVKLAKCIEKAAASV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.