RetrogeneDB ID: retro_mluc_1232

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429808:5819044..5819982(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DNAJC7
• Ensembl ID: ENSMLUG00000011968
• Aliases: None
• Description: None

Sequence

>retro_mluc_1232
CTCAAAGCAGAATGTTTAGCAATGCTGGGTCATTAGCCAGAAGCACAGCCTGTGGCCAGTGACATTTTATGAATGGATTC
CACGAATGCGGATGCTCTGTATGTATGAGTCTTTGTCCTTATTATGAAGATTATATTGAGAAGGTGGTTCAGTTTTTTGT
ACAGGCTCTCAGGATGGCTCCTGACCATGAAAAGGCCTGTGTTGCTTGCACAAATGCCAAAGCACTGAAAGCAAAGAAGA
TGGGAATAAAGCCTTTAAAAAAGGAAATGACAAGCTAGCATATGAACTGTACACAGAAGCCCTAGGGATAGACCCCAAAT
ATATAAAAACAAATGCTAAACTCTGCTATAATCAGGGTATGGTTAATTCCACGCTTAGGAAACTAGATGATGCAATAGAA
GACTGCACAAATGCAGGGAAGGTCGATGACACTTATATAGAAGCTTACTTGAGAAAAGCTCAGTGTTACAAGGACACAGA
ACAGTATGAAGAAGTAGTGAGGGACTAAGAAAAAGTGTATCAGATGGAGAAAACAAAGAGGACACAAACAACTCCTTAAA
AATGCACAGCTGGAACTGACGAAGAGTGAAAGGAAAGATTACTACAAGATTCTGGGAGTGAACAAGAAAGCCTCTGAGGA
TAAGATCAAGAAAGCTTATTGGAAACGGGCCTTGATGCACCGTCCAGATCGACACAGTGGAGCCATTGCGGAAGTTCAGA
AGGAGGAGAAGAAAAAGTTCAAGTAAGTAGGAGAAGCTTTTACCATCTTCTCTGATCCCAAGAAAAAGACTCTCTATGAC
AGTGGACAGGACCTAGAGGAGGAGGGCATGAATATGGGTGATTTTTATGCAAACAATATCTTCAAGGCATTCTTTGGTGG
TCCTGGGGGCTTCAGCTTTGAAGTATCTGTCCAGGGAATTTCTTTTTTTCAATTTGGC

Alignment

ORF - retro_mluc_1232 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.02 %
• Parental protein coverage: 63.56 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LKAECLAMLGRYPEAQSVASDILRMDSTNADALYV-RGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVA
          LKAECLAMLG..PEAQ.VASDIL.MDSTNADALYV...LC.YYED.IEK.VQFFVQALRMAPDHEKACVA
Retrocopy LKAECLAMLGH*PEAQPVASDIL*MDSTNADALYV<MSLCPYYEDYIEKVVQFFVQALRMAPDHEKACVA

Parental  CRNAKALKAKKEDGNKAFK-EGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
          C.NAKALKAKK..G.K..K..GN.KLAYELYTEALGIDP..IKTNAKL..N.G.VNS.LRKLDDAIEDCT
Retrocopy CTNAKALKAKKM-GIKPLK<KGNDKLAYELYTEALGIDPKYIKTNAKLCYNQGMVNSTLRKLDDAIEDCT

Parental  SAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKE-HKQLLKNAQMELKKSKRKDYYKILG
          .A.K.DDTYI.AYLR.AQCY.DTEQYEE.VRD.EKVYQ.EKTK..HKQLLKNAQ.EL.KS.RKDYYKILG
Retrocopy NAGKVDDTYIEAYLRKAQCYKDTEQYEEVVRD*EKVYQMEKTKR>HKQLLKNAQLELTKSERKDYYKILG

Parental  VDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEG
          V.K.ASED.IKKAY.KRALMH.PDRHSGA.AEVQKEE.KKFK.VGEAFTI.SDPKKKT.YDSGQDL.EEG
Retrocopy VNKKASEDKIKKAYWKRALMHRPDRHSGAIAEVQKEEKKKFK*VGEAFTIFSDPKKKTLYDSGQDLEEEG

Parental  MNMGDFDANNIFKAFFGGPGGFSFEASGPGNFFFQFG
          MNMGDF.ANNIFKAFFGGPGGFSFE.S..G..FFQFG
Retrocopy MNMGDFYANNIFKAFFGGPGGFSFEVSVQGISFFQFG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1232 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000015749	1 retrocopy	retro_cfam_451,
Callithrix jacchus	ENSCJAG00000035699	2 retrocopies	retro_cjac_2381, retro_cjac_2475,
Homo sapiens	ENSG00000168259	1 retrocopy	retro_hsap_3524,
Gorilla gorilla	ENSGGOG00000010230	2 retrocopies	retro_ggor_2382, retro_ggor_396,
Myotis lucifugus	ENSMLUG00000011968	2 retrocopies	retro_mluc_1232 , retro_mluc_1527,
Macaca mulatta	ENSMMUG00000016118	3 retrocopies	retro_mmul_1084, retro_mmul_1854, retro_mmul_501,
Nomascus leucogenys	ENSNLEG00000011230	2 retrocopies	retro_nleu_1569, retro_nleu_490,
Pongo abelii	ENSPPYG00000008402	2 retrocopies	retro_pabe_2911, retro_pabe_317,
Pan troglodytes	ENSPTRG00000009188	2 retrocopies	retro_ptro_2393, retro_ptro_304,