RetrogeneDB ID: retro_meug_349

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold103845:3389..3862(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000006157
• Aliases: None
• Description: None

Sequence

>retro_meug_349
GCCGCCATGAACCGCCAGATCAACCTGGAGCTCTACGCCTCCTACGCCTACCTGTCCACGTCGTACTACTTTGACCGCGA
TGACGTAGCGCTGAAGAACTTCGCCAAGTACTTCCTCCTCCAGTCCCACGAGGAGAGGGAGCACGCTGAGAAGCTGATGA
AGCTCCAGAACCAGCGCGGCGGCCCATCTTCCTGCAGGACATCAGGAAACCCGACCGAGATGACTGGGAGAGTGGGCTGA
ATGCAATGGAGTGCGCTCTGCACCTGGAAAAAAATGTCAATCAGTCGTTACTGGAACTGCACAAGCTGGCAACTGACAAG
AATGACCCCCATTCATGTGATTTCATCGAAACTCACTATCTGGACGAACAGGTAAAGTCCATCAAACAACTGGGTGATCA
CGTCACCCACCTGCGCAAAATGGGGGCCCCCGATTCTGGCATGGCGGAACATCTTTTTGACAAGCACACCCTT

Alignment

ORF - retro_meug_349 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.88 %
• Parental protein coverage: 98.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AAVNRLANLYLQASYSYLSLGFYFDRDDVALPRVSRFFRELAKDKREGAERLMRLQNQRGG-RVLLQAVQ
          AA.NR..NL.L.ASY.YLS...YFDRDDVAL......F.......RE.AE.LM.LQNQRGG....LQ...
Retrocopy AAMNRQINLELYASYAYLSTSYYFDRDDVALKNFAKYFLLQSHEEREHAEKLMKLQNQRGG<PIFLQDIR

Parental  KPAQDEWGRSLDAMEAA-NLEKGLSQALLKLHALGSSQGDPHLCDFLESHYLGEEVKLLKRLGDHLSTLR
          KP..D.W...L.AME.A..LEK...Q.LL.LH.L.....DPH.CDF.E.HYL.E.VK..K.LGDH...LR
Retrocopy KPDRDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHSCDFIETHYLDEQVKSIKQLGDHVTHLR

Parental  HLQADPQAGLGEYLFERLNL
          ...A.P..G..E.LF....L
Retrocopy KMGA-PDSGMAEHLFDKHTL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_349 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_349 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006157	5 retrocopies	retro_meug_1020, retro_meug_1224, retro_meug_1314, retro_meug_1425, retro_meug_349 ,
Macropus eugenii	ENSMEUG00000011453	2 retrocopies	retro_meug_1070, retro_meug_876,
Monodelphis domestica	ENSMODG00000013730	3 retrocopies	retro_mdom_1989, retro_mdom_6, retro_mdom_745,
Sarcophilus harrisii	ENSSHAG00000003637	1 retrocopy	retro_shar_595,