RetrogeneDB ID: retro_meug_1020

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold261548:1382..1856(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000006157
• Aliases: None
• Description: None

Sequence

>retro_meug_1020
GCCACTGTCAACTGCCTGGCCAACTTGTACCTGCAGGTCCCCTTTTCCTACCGGTTCCTGGATTTCTATTTCAACCAGGA
CAATGTTGCCCTGCCTAGGGTGTCCCATTTTTTCCATGAGCTGCTAAAGGACAAATGTGAAGGCGTTGAGCTCTTTATGT
GACTCCAGAACCAGTGTGAGGGCCATATTCTCCTCCAGGCTGTGCAGAAATCTGCCCAAGATGAGTGGGGCCTCAGCTTG
GCTGCCATAAACCTGGAGAAGGGCCTGAAGCAGGTCCTCCTGAAATTGCATGCCCTGGGCTGGAGCCAAGGGGATCCAGA
CCTCTGTGACTTCCTGCAGAGCCATTACCTATACAAGGAGTTGAAGCTGCTGAAGCCCTTGGGCAACGACCTGACCACCC
TGTGCCACTCACAGGCAGACCCCCAGGTGGGGCTGGGTCAGTACTTGTTTGAGCGGCTGAGCCTGAAGCATAAC

Alignment

ORF - retro_meug_1020 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.19 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AAVNRLANLYLQASYSYLSLGFYFDRDDVALPRVSRFFRELAKDKREGAERLMRLQNQRGGRVLLQAVQK
          A.VN.LANLYLQ...SY..L.FYF..D.VALPRVS.FF.EL.KDK.EG.E..M.LQNQ..G..LLQAVQK
Retrocopy ATVNCLANLYLQVPFSYRFLDFYFNQDNVALPRVSHFFHELLKDKCEGVELFM*LQNQCEGHILLQAVQK

Parental  PAQDEWGRSLDAMEAANLEKGLSQALLKLHALGSSQGDPHLCDFLESHYLGEEVKLLKRLGDHLSTLRHL
          .AQDEWG.SL.A....NLEKGL.Q.LLKLHALG.SQGDP.LCDFL.SHYL..E.KLLK.LG..L.TL.H.
Retrocopy SAQDEWGLSLAAI---NLEKGLKQVLLKLHALGWSQGDPDLCDFLQSHYLYKELKLLKPLGNDLTTLCHS

Parental  QADPQAGLGEYLFERLNLKHD
          QADPQ.GLG.YLFERL.LKH.
Retrocopy QADPQVGLGQYLFERLSLKHN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1020 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1020 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006157	5 retrocopies	retro_meug_1020 , retro_meug_1224, retro_meug_1314, retro_meug_1425, retro_meug_349,
Macropus eugenii	ENSMEUG00000011453	2 retrocopies	retro_meug_1070, retro_meug_876,
Monodelphis domestica	ENSMODG00000013730	3 retrocopies	retro_mdom_1989, retro_mdom_6, retro_mdom_745,
Sarcophilus harrisii	ENSSHAG00000003637	1 retrocopy	retro_shar_595,