RetrogeneDB ID: retro_meug_1314

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold3656:15280..15655(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000006157
• Aliases: None
• Description: None

Sequence

>retro_meug_1314
GCTGTCAACTGCCTGGCTAACCTGTACCTGCAGGCCTCCTCCTCCTCCCTGTCCCTAGATTTCTTTTTTGACAGTGGTGA
TGTTGCCCTCCTTAGTGGGTCGTGTTTTTTCCGTGAGCTGGCAAAGGACAAATGCGAGGGTGTCCAGTGCCTTATGAGGC
TCCAGAACCGACTTTGGGCCATGGCCTCTTCCAGACTGTGCAGAAACCTGCCCAAGATGAGTGGGGTTGGCAGCTTGGAT
GCCATGCAGGCTGCCCAGAACCTGGAGAAGGGCCTGAACAAGGCTCTCCTGAAGCTGCAATCGCTGTGCTGGAGCCAAGG
GGATTCATACCTCTGCAATATCCTGAAGAGCCATTACCTGGGTGAGGAGGCTAAA

Alignment

ORF - retro_meug_1314 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.29 %
• Parental protein coverage: 77.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AVNRLANLYLQASYSYLSLGFYFDRDDVALPRVSRFFRELAKDKREGAERLMRLQNQRG-GRVLLQAVQK
          AVN.LANLYLQAS.S.LSL.F.FD..DVAL...S.FFRELAKDK.EG...LMRLQN....G..L.Q.VQK
Retrocopy AVNCLANLYLQASSSSLSLDFFFDSGDVALLSGSCFFRELAKDKCEGVQCLMRLQNRLW<GHGLFQTVQK

Parental  PAQDEWG-RSLDAMEAA-NLEKGLSQALLKLHALGSSQGDPHLCDFLESHYLGEEVK
          PAQDEWG..SLDAM.AA.NLEKGL..ALLKL..L..SQGD..LC..L.SHYLGEE.K
Retrocopy PAQDEWG>GSLDAMQAAQNLEKGLNKALLKLQSLCWSQGDSYLCNILKSHYLGEEAK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1314 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1314 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006157	5 retrocopies	retro_meug_1020, retro_meug_1224, retro_meug_1314 , retro_meug_1425, retro_meug_349,
Macropus eugenii	ENSMEUG00000011453	2 retrocopies	retro_meug_1070, retro_meug_876,
Monodelphis domestica	ENSMODG00000013730	3 retrocopies	retro_mdom_1989, retro_mdom_6, retro_mdom_745,
Sarcophilus harrisii	ENSSHAG00000003637	1 retrocopy	retro_shar_595,