RetrogeneDB ID: retro_meug_1070

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold275898:1149..1665(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000011453
• Aliases: None
• Description: None

Sequence

>retro_meug_1070
TCTCAGGTGCGGCAGAACTACCACCAGGACTCGGAGGCCGCCATCAACCGCCAGATCAACCTGGAGCTCTACGCCTCCTA
CGTCTACCTGTCCATGTCGTACTACTTTGACCGCGATGACGTAGCGCTGAAGAACTTCGCCAAGTACTTCCTCCACCAGT
CCCACGAGGAGAGGGAGCACGCTGAGAAGCTGATGAAGCTCCAGAACCAGCGCGGCGGCCGCATCTTCCTGCAGGACATC
AAGAAACCCGACCGAGATGACTGGGAGAGTGGGCTGAATGCAATGGAGTGCGCTCTGCACCTGGAAAAAAATGTCAATCA
GTCGTTACTGGAACTGCACAAGCTGGCAACTGACAAGAATGACCCCCATTTATGTGATTTCATCGAAACCCACTACCTGG
ACGAACAGGTAAAGTCCATCAAACAACTGGGTGATCACGTAACCAACCTGCGCAAAATGGGGGCCCCCGATTCTGGCATG
GCGGAATATCTTTTTGACAAGCACACCCTTGGAGAC

Alignment

ORF - retro_meug_1070 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.33 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SQVLQNFHTDCEVAINDLVNMELCANYVYLSGSF---GDNVTLKNFTRCFLHQPHKETGDAEKPXXXXXX
          SQV.QN.H.D.E.AIN...N.EL.A.YVYLS.S.....D.V.LKNF...FLHQ.H.E...AEK.......
Retrocopy SQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQ

Parental  XXXXXXXXXXXKPECDDWRNSLEVLEIVMKIEKKINQALLNLHNLAMEKSDPHLCDFLEREYLDKQVTII
          ...........KP..DDW...L...E.....EK..NQ.LL.LH.LA..K.DPHLCDF.E..YLD.QV..I
Retrocopy RGGRIFLQDIKKPDRDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLDEQVKSI

Parental  KCLGEHITNLRRLGAPESGLGEYLFDKLTLGN
          K.LG.H.TNLR..GAP.SG..EYLFDK.TLG.
Retrocopy KQLGDHVTNLRKMGAPDSGMAEYLFDKHTLGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

1 EST(s) were mapped to retro_meug_1070 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
EX200676	1148	1361	100	213	0	213

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1070 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000004685	1 retrocopy	retro_acar_188,
Macropus eugenii	ENSMEUG00000006157	5 retrocopies	retro_meug_1020, retro_meug_1224, retro_meug_1314, retro_meug_1425, retro_meug_349,
Macropus eugenii	ENSMEUG00000011453	2 retrocopies	retro_meug_1070 , retro_meug_876,