RetrogeneDB ID: retro_meug_1224

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold332577:1160..1583(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000006157
• Aliases: None
• Description: None

Sequence

>retro_meug_1224
GCCGCCATCAACCGCCAGATCAACCTGGAGCTCTGCGCCTCTTACATCTACCTGTCCATGTCTTACTACTTTGGCCGAGA
TGATGTAGCGCTGAAGAACTTCGCCAAGTACTTCCTCCACCAGTCCCAGGAGGAGAGGGAGCACGCTGAGAAGCTGAGGA
AGCTCCAGAACCAGCGCGGCGGCCGCATCTTCCTGCAGGACATCAAGAAACCCGACAGAGATGACTGGGAGAGTGGGCTG
AATGCAATGGAGTGTGCTCTGCACTTGGAAAAAAATGTCAGTCAGTCGTTCCTGGACTTGTACAAGCTGGCAACTGACAA
GAATGACCCCCATTTATGTGACCTCATCAAAACCCACTACCTGGACCAACAGGTAAAGTCCATCAAACAACTGGGTGATC
AGGTTGGCAACCTGCGCAAAATG

Alignment

ORF - retro_meug_1224 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.35 %
• Parental protein coverage: 86.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AAVNRLANLYLQASYSYLSLGFYFDRDDVALPRVSRFFRELAKDKREGAERLMRLQNQRGGRVLLQAVQK
          AA.NR..NL.L.ASY.YLS...YF.RDDVAL......F.......RE.AE.L..LQNQRGGR..LQ...K
Retrocopy AAINRQINLELCASYIYLSMSYYFGRDDVALKNFAKYFLHQSQEEREHAEKLRKLQNQRGGRIFLQDIKK

Parental  PAQDEWGRSLDAMEAA-NLEKGLSQALLKLHALGSSQGDPHLCDFLESHYLGEEVKLLKRLGDHLSTLRH
          P..D.W...L.AME.A..LEK..SQ..L.L..L.....DPHLCD....HYL...VK..K.LGD....LR.
Retrocopy PDRDDWESGLNAMECALHLEKNVSQSFLDLYKLATDKNDPHLCDLIKTHYLDQQVKSIKQLGDQVGNLRK

Parental  L
          .
Retrocopy M

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1224 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1224 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006157	5 retrocopies	retro_meug_1020, retro_meug_1224 , retro_meug_1314, retro_meug_1425, retro_meug_349,
Macropus eugenii	ENSMEUG00000011453	2 retrocopies	retro_meug_1070, retro_meug_876,
Monodelphis domestica	ENSMODG00000013730	3 retrocopies	retro_mdom_1989, retro_mdom_6, retro_mdom_745,
Sarcophilus harrisii	ENSSHAG00000003637	1 retrocopy	retro_shar_595,