Parental gene:

MRPL15, ENSSSCG00000030578

Aliases:None
Description:mitochondrial ribosomal protein L15 [Source:HGNC Symbol;Acc:14054]
Organism:Pig (Sus scrofa)
Coordinates:4:84141818..84149457(-)


>ENSSSCG00000030578
ATGGGCGGCCCCGTGCAGGGCGGTGGGCCCCGGGCCCTGGACCTGCTGCGAGCCCTTCCCCGTGTGAGTCTGGCCAACCT
GAAGCCGAACCCGGGCTCCAGGAAACCGGAAAGACGACCAAGAGGTCGGAGAAGAGGCAGAAAATGTGGCAGAGGCCACA
AGGGAGAACGGCAGAGAGGAACCCGGCCCCGATTGGGCTTTGAGGGAGGCCAGACTCCATTCTACCTTCGAATCCCAAAA
TATGGCTTTAATGAAGGACATAGCTTCCGACACCAGTATCAGCCTTTGAGTCTCAATAGACTGCAGTATCTTATTGACTT
GGGTCGAGTTGATCCTACACAACCTATTGACTTAACCCAGCTTGTCAATGGCAGGGGTGTGACCATCCAGCCATCTAAGA
GGGATTATGGTGTCCAGCTGGTAGAGGAGGGTGCCGACACCTTTAAGGCGAAAGTCAATATTGAAGTACAGATGGCTTCA
GAGCTGGCCATCGCTGCAATCGAGAAGAATGGGGGTGTTGTCACGACGGCCTTCTACGACCCGAGAAGCTTGGAAATTCT
GTGCAAACCTGTTCCGTTCTTTCTCCGGGGACAACCCATCCCGAAGCGCATGCTCCCCCCCGAGGCGCTGGTGCCATACT
ACACTGATGCAAAGAACCGCGGGTACCTGGCGGATCCTGCCCGATTTCCTGAAGCAAGGCTTGAGCTCGCCAGGAAGTAC
GGTTATGTTTTGCCTGATATCACTAAAGACGAACTCTTCAAAATGCTCAGTACTCGAAAGGATCCAAGGCAGATTTTCTT
TGGTCTTGCTCCCGGATGGGTGGTGAATATGGCAGATAAGAAAATCCTAAAACCTACAGATGAGAATCTCCTCAAGTACT
ACAGCTCGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 14 .20 RPM
SRP014902_testis 40 .74 RPM
SRP018856_adipose 35 .18 RPM
SRP018288_kidney 45 .81 RPM
SRP018288_lung 31 .46 RPM
SRP018288_liver 29 .10 RPM
SRP018288_heart 33 .61 RPM
SRP035408_liver 23 .69 RPM
SRP035408_brain 51 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001174 ortholog_one2one 1 retrogene
retro_btau_324,
Canis familiaris ENSCAFG00000006988 ortholog_one2one 2 retrogenes
retro_cfam_1573, retro_cfam_511,
Choloepus hoffmanni ENSCHOG00000005299 ortholog_one2one 3 retrogenes
retro_chof_1379, retro_chof_1719, retro_chof_746,
Callithrix jacchus ENSCJAG00000016719 ortholog_one2one 1 retrogene
retro_cjac_2230,
Dasypus novemcinctus ENSDNOG00000017664 ortholog_one2one 1 retrogene
retro_dnov_364,
Erinaceus europaeus ENSEEUG00000001454 ortholog_one2one 2 retrogenes
retro_eeur_128, retro_eeur_707,
Echinops telfairi ENSETEG00000001724 ortholog_one2one 1 retrogene
retro_etel_1304,
Mustela putorius furo ENSMPUG00000010533 ortholog_one2many 1 retrogene
retro_mputfur_149,
Mus musculus ENSMUSG00000033845 ortholog_one2one 2 retrogenes
retro_mmus_1709, retro_mmus_3534,
Ornithorhynchus anatinus ENSOANG00000007286 ortholog_one2one 1 retrogene
retro_oana_114,
Otolemur garnettii ENSOGAG00000003768 ortholog_one2one 1 retrogene
retro_ogar_534,
Ochotona princeps ENSOPRG00000000921 ortholog_one2one 2 retrogenes
retro_opri_241, retro_opri_364,
Rattus norvegicus ENSRNOG00000008566 ortholog_one2one 2 retrogenes
retro_rnor_1344, retro_rnor_2785,
Tarsius syrichta ENSTSYG00000014106 ortholog_one2many 1 retrogene
retro_tsyr_37,
Tursiops truncatus ENSTTRG00000011844 ortholog_one2one 2 retrogenes
retro_ttru_1139, retro_ttru_733,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_617 75.84 60.14
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Download FASTA sequences of all ENSSSCG00000030578 retrocopies