Parental gene:

UBCH5B, ENSSSCG00000029822

Aliases:None
Description:Sus scrofa ubiquitin-conjugating enzyme E2D 2 (UBE2D2), mRNA. [Source:RefSeq mRNA;Acc:NM_001078673]
Organism:Pig (Sus scrofa)
Coordinates:8:127191817..127203830(+)


>ENSSSCG00000029822
GTAGGAATTATTAAAATAGACAAAGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGG
GGATGATATGTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGTGGTGTATTCTTTTTGACAA
TTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGT
AATGGCAGCATTTGTCTCGATATTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTG
TTCACTGCTATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGACAGAGATAAGT
ACAACAGAATATCTCGGGAATGGACTCAGAAGTATGCCATGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .00 RPM
SRP014902_testis 0 .00 RPM
SRP018856_adipose 0 .06 RPM
SRP018288_kidney 0 .20 RPM
SRP018288_lung 0 .61 RPM
SRP018288_liver 0 .16 RPM
SRP018288_heart 0 .71 RPM
SRP035408_liver 0 .00 RPM
SRP035408_brain 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004649 ortholog_one2many 2 retrogenes
retro_chof_2549, retro_chof_439,
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Callithrix jacchus ENSCJAG00000015492 ortholog_one2many 3 retrogenes
retro_cjac_512, retro_cjac_657, retro_cjac_791,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Dasypus novemcinctus ENSDNOG00000009320 possible_ortholog 30 retrogenes
retro_dnov_1061, retro_dnov_1125, retro_dnov_113, retro_dnov_114, retro_dnov_1167, retro_dnov_1193, retro_dnov_1198, retro_dnov_1257, retro_dnov_141, retro_dnov_1544, retro_dnov_1752, retro_dnov_1761, retro_dnov_1831, retro_dnov_1862, retro_dnov_1912, retro_dnov_1934, retro_dnov_1995, retro_dnov_2084, retro_dnov_2135, retro_dnov_2289, retro_dnov_2362, retro_dnov_2457, retro_dnov_2622, retro_dnov_436, retro_dnov_574, retro_dnov_750, retro_dnov_795, retro_dnov_83, retro_dnov_889, retro_dnov_917,
Dipodomys ordii ENSDORG00000006762 ortholog_one2many 2 retrogenes
retro_dord_172, retro_dord_323,
Equus caballus ENSECAG00000020678 ortholog_one2many 1 retrogene
retro_ecab_859,
Erinaceus europaeus ENSEEUG00000010820 possible_ortholog 1 retrogene
retro_eeur_84,
Erinaceus europaeus ENSEEUG00000014658 possible_ortholog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Felis catus ENSFCAG00000024918 possible_ortholog 2 retrogenes
retro_fcat_1106, retro_fcat_785,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Gorilla gorilla ENSGGOG00000010832 ortholog_one2many 1 retrogene
retro_ggor_953,
Macropus eugenii ENSMEUG00000004256 ortholog_one2many 6 retrogenes
retro_meug_1034, retro_meug_1503, retro_meug_2138, retro_meug_564, retro_meug_787, retro_meug_89,
Mus musculus ENSMUSG00000078578 possible_ortholog 11 retrogenes
retro_mmus_1818, retro_mmus_1895, retro_mmus_1913, retro_mmus_2293, retro_mmus_2635, retro_mmus_2643, retro_mmus_3119, retro_mmus_3636, retro_mmus_850, retro_mmus_875, retro_mmus_923,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Otolemur garnettii ENSOGAG00000012860 possible_ortholog 6 retrogenes
retro_ogar_1124, retro_ogar_3047, retro_ogar_3048, retro_ogar_3110, retro_ogar_544, retro_ogar_599,
Ochotona princeps ENSOPRG00000011695 possible_ortholog 9 retrogenes
retro_opri_1042, retro_opri_1189, retro_opri_206, retro_opri_310, retro_opri_447, retro_opri_457, retro_opri_627, retro_opri_77, retro_opri_838,
Pongo abelii ENSPPYG00000014967 possible_ortholog 1 retrogene
retro_pabe_91,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Rattus norvegicus ENSRNOG00000013741 possible_ortholog 9 retrogenes
retro_rnor_2777, retro_rnor_342, retro_rnor_345, retro_rnor_539, retro_rnor_650, retro_rnor_724, retro_rnor_725, retro_rnor_772, retro_rnor_784,
Sus scrofa ENSSSCG00000011209 other_paralog 2 retrogenes
retro_sscr_759, retro_sscr_961,
Sus scrofa ENSSSCG00000016722 within_species_paralog 2 retrogenes
retro_sscr_671, retro_sscr_79,
Sus scrofa ENSSSCG00000024306 within_species_paralog 1 retrogene
retro_sscr_783,
Ictidomys tridecemlineatus ENSSTOG00000013481 possible_ortholog 6 retrogenes
retro_itri_1222, retro_itri_1474, retro_itri_1628, retro_itri_463, retro_itri_672, retro_itri_998,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_672 62.02 83.67
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2. retro_sscr_673 62.02 83.67
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3. retro_sscr_918 91.27 85.71
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4. retro_sscr_1016 70.97 83.67
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Download FASTA sequences of all ENSSSCG00000029822 retrocopies