Parental gene:

Ube2d3, ENSMUSG00000078578

Aliases:Ube2d3, 1100001F19Rik, 9430029A22Rik, AA414951
Description:ubiquitin-conjugating enzyme E2D 3 [Source:MGI Symbol;Acc:MGI:1913355]
Organism:Mouse (Mus musculus)
Coordinates:3:135438296..135467178(+)


>ENSMUSG00000078578
ATGGCGCTGAAACGGATTAATAAGGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGG
AGATGACATGTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGTGGTGTATTCTTTTTGACAA
TTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGT
AATGGCAGCATTTGTCTTGATATTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTG
TTCACTGCTATGTGATCCAAACCCAGACGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGACAGAGATAAGT
ACAACAGAATATCTCGGGAATGGACTCAGAAGTATGCCATGTGA

Library Parental gene expression (RPM)
SRP007412_brain 96 .68 RPM
SRP007412_cerebellum 65 .26 RPM
SRP007412_heart 135 .32 RPM
SRP007412_kidney 106 .26 RPM
SRP007412_liver 106 .78 RPM
SRP007412_testis 71 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Erinaceus europaeus ENSEEUG00000014658 possible_ortholog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Felis catus ENSFCAG00000024918 ortholog_one2one 2 retrogenes
retro_fcat_1106, retro_fcat_785,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Mus musculus ENSMUSG00000019927 within_species_paralog 22 retrogenes
retro_mmus_3405, retro_mmus_3406, retro_mmus_3407, retro_mmus_3409, retro_mmus_3430, retro_mmus_3432, retro_mmus_3434, retro_mmus_3435, retro_mmus_3436, retro_mmus_3563, retro_mmus_3564, retro_mmus_3565, retro_mmus_3566, retro_mmus_3567, retro_mmus_3587, retro_mmus_3589, retro_mmus_3590, retro_mmus_3591, retro_mmus_3592, retro_mmus_3593, retro_mmus_3594, retro_mmus_3595,
Mus musculus ENSMUSG00000021774 other_paralog 3 retrogenes
retro_mmus_2493, retro_mmus_2600, retro_mmus_537,
Mus musculus ENSMUSG00000027011 other_paralog 4 retrogenes
retro_mmus_2814, retro_mmus_3123, retro_mmus_3416, retro_mmus_3571,
Mus musculus ENSMUSG00000038965 within_species_paralog 10 retrogenes
retro_mmus_1619, retro_mmus_1620, retro_mmus_2147, retro_mmus_2212, retro_mmus_2272, retro_mmus_2315, retro_mmus_3205, retro_mmus_3714, retro_mmus_541, retro_mmus_995,
Mus musculus ENSMUSG00000091896 within_species_paralog 3 retrogenes
retro_mmus_2267, retro_mmus_27, retro_mmus_629,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Pongo abelii ENSPPYG00000014967 ortholog_one2one 1 retrogene
retro_pabe_91,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Sus scrofa ENSSSCG00000024306 possible_ortholog 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 possible_ortholog 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Ictidomys tridecemlineatus ENSSTOG00000013481 possible_ortholog 6 retrogenes
retro_itri_1222, retro_itri_1474, retro_itri_1628, retro_itri_463, retro_itri_672, retro_itri_998,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_850 87.80 83.67
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_mmus_875 53.49 57.14
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_mmus_923 87.70 82.99
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_mmus_1818 62.39 76.87
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_mmus_1895 85.11 63.95
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_mmus_1913 74.05 89.12
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_mmus_2293 93.20 100.00
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_mmus_2635 83.21 87.07
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_mmus_2643 80.77 87.07
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_mmus_3119 93.88 100.00
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_mmus_3636 92.52 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMUSG00000078578 retrocopies