Parental gene:

UBE2D3, ENSEEUG00000010820

Aliases:None
Description:ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_324129:6603..11305(-)


>ENSEEUG00000010820
GAGCTGAGTGACCTGGCCCGTGACCCCCCTGCACAGTGCTCTGCAGGCCCCGTGGGGGATGACATGTTCCATTGGCAAGC
CACAATTATGGGACCTAATGACAGCCCATATCAAGGCGGCGTGTTCTTTCTGACTATTCACTTCCCTACAGACTACCCCT
TCAAACCACCCAAGGCAGTTGCATTTACAACAAGAATTTATCACCCAAATATTAACAGTAATGGCAGCATTTGTCTCGAT
ATTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTCTCTCCATTTGCTCACTGCTTTGTGATCCAAA
CCCAGATGACCCCCTAGTGCCAGAGATCGCACGGATCTATAAGACAGACAGAGATAAGTACAATAGGTTAGCAAGAGAGT
GGACAGAGAAATACGCTATGTTGTAG

Library Parental gene expression (RPM)
SRP017611_liver 40 .68 RPM
SRP017611_kidney 60 .39 RPM
SRP017611_brain 42 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Erinaceus europaeus ENSEEUG00000014658 within_species_paralog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Otolemur garnettii ENSOGAG00000012860 ortholog_one2one 6 retrogenes
retro_ogar_1124, retro_ogar_3047, retro_ogar_3048, retro_ogar_3110, retro_ogar_544, retro_ogar_599,
Pongo abelii ENSPPYG00000014967 possible_ortholog 1 retrogene
retro_pabe_91,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Sus scrofa ENSSSCG00000024306 possible_ortholog 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 possible_ortholog 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_84 69.64 78.01
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Download FASTA sequences of all ENSEEUG00000010820 retrocopies