Parental gene:

OSTF1, ENSSSCG00000005273

Aliases:None
Description:Sus scrofa osteoclast stimulating factor 1 (OSTF1), mRNA. [Source:RefSeq mRNA;Acc:NM_214005]
Organism:Pig (Sus scrofa)
Coordinates:1:255040335..255094990(+)


>ENSSSCG00000005273
ATGTCGAAGCCGCCACCCAAACCGGTCAAACCAGGGCAAGTTAAAGTATTCAGAGCTCTTTATACATTTGAACCCAGAAC
TCCAGATGAATTGTACTTTGAAGAAGGTGATATCATCTACATTACTGACATGAGTGATACCAATTGGTGGAAAGGCACTT
CCAAAGGCAGGACTGGACTGATCCCAAGCAACTACGTGGCTGAACAGGCAGAATCCATTGACAATCCATTGCATGAAGCT
GCAAAAAGAGGCAACTTGAGCTGGTTGAGAGAGTGTTTGGACAACCGAGTTGGTGTTAATGGCTTAGACAAAGCTGGAAG
CACTGCCCTATATTGGGCTTGTCATGGGGGCCACAAAGATATAGTGGACATGCTGTTTACTCAGCCAAACATTGAACTGA
ACCAGCAGAACAAGTTGGGAGATACAGCTTTGCATGCTGCTGCCTGGAAGGGTTATGCGGATATCGTCCAGTTGCTTCTG
GCAAAAGGTGCTAGAACAGACTTAAGGAACAATGAGAAGAAACTGGCCCTGGACATGGCTACTAATGCTGCCTGTGCATC
TCTCCTGAAAAAGAAACAGGGAACAGATGCAGTTCGAACATTAAGCAATGCTGAAGACTATCTTGATGATGAAGACTCAG
ATTAA

Library Parental gene expression (RPM)
SRP014902_placenta 71 .41 RPM
SRP014902_testis 31 .83 RPM
SRP018856_adipose 93 .08 RPM
SRP018288_kidney 25 .51 RPM
SRP018288_lung 58 .75 RPM
SRP018288_liver 52 .13 RPM
SRP018288_heart 28 .32 RPM
SRP035408_liver 41 .10 RPM
SRP035408_brain 18 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012808 ortholog_one2one 1 retrogene
retro_cjac_3249,
Cavia porcellus ENSCPOG00000007226 ortholog_one2one 1 retrogene
retro_cpor_1049,
Dipodomys ordii ENSDORG00000002933 ortholog_one2one 1 retrogene
retro_dord_698,
Erinaceus europaeus ENSEEUG00000008320 ortholog_one2one 2 retrogenes
retro_eeur_545, retro_eeur_683,
Felis catus ENSFCAG00000022374 ortholog_one2one 1 retrogene
retro_fcat_1869,
Homo sapiens ENSG00000134996 ortholog_one2one 1 retrogene
retro_hsap_1058,
Gorilla gorilla ENSGGOG00000011920 ortholog_one2one 1 retrogene
retro_ggor_836,
Macaca mulatta ENSMMUG00000010401 ortholog_one2one 1 retrogene
retro_mmul_836,
Nomascus leucogenys ENSNLEG00000001854 ortholog_one2one 1 retrogene
retro_nleu_2502,
Otolemur garnettii ENSOGAG00000002603 ortholog_one2one 1 retrogene
retro_ogar_2962,
Pongo abelii ENSPPYG00000019300 ortholog_one2one 1 retrogene
retro_pabe_883,
Pan troglodytes ENSPTRG00000021031 ortholog_one2one 1 retrogene
retro_ptro_720,
Rattus norvegicus ENSRNOG00000012156 ortholog_one2one 2 retrogenes
retro_rnor_936, retro_rnor_937,
Tursiops truncatus ENSTTRG00000003081 ortholog_one2one 1 retrogene
retro_ttru_492,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_979 81.25 95.33
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Download FASTA sequences of all ENSSSCG00000005273 retrocopies