RetrogeneDB ID:

retro_nleu_2502

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397363.1:3003053..3003659(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:OSTF1
Ensembl ID:ENSNLEG00000001854
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2502
ATGTCGAAGCTGCCACCCAAACCAGTCAAACCAGGGTAAGATAAAGTCTTCAGAGTCCTCTATACATTTGAACCCAGAAC
TCCAGATGAACTATGCTCTGAGGAAGGTGATATCTACGTTACTGACAAGAATGACGCAAATTGGTGGAAAGGCACCTCCA
AAGGCAGGACTGGACTAACTCCAAGCAACTATGTGGCCGAGCAGGCAGAATCCATTGACAATCTATTGCATGAAGTAGCA
AAAAGAGGCAACTTGAGCTGGTTGCGAGAGTGTTTGGACAACCGAGTGGGTGTTAATGCCTTAGACAAGGCTGGAAGCAC
TGCCTTAGACTAGGCTTGTCATGGGGATCTCAGAGATCTAGTGGAAATGCTGTTTACTCAATGGAGTATTTAACTGAGCC
AACAGAACAAGTTGGGAGACACAGCTTTGCATGCTGCTGCCTGGAAGGGTTATGCAGACATCGTCCAGTTGCTTCTGGCA
AAAGGTGCCAGAACAGACTGAAGAAACAATGAGAAGAAGCTGGCTTTGGGTATGGCTACCAATGCCCATGCATCTCTCCT
GAAAAAGAAACAGGAGACAGATACAGTTCGAACACTAAGCAATGCT

ORF - retro_nleu_2502 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.31 %
Parental protein coverage: 95.33 %
Number of stop codons detected: 4
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA
MSK.PPKPVKPG..KVFR.LYTFEPRTPDEL..EEGDI.Y.TD..D.NWWKGTSKGRTGL.PSNYVAEQA
RetrocopyMSKLPPKPVKPG*DKVFRVLYTFEPRTPDELCSEEGDI-YVTDKNDANWWKGTSKGRTGLTPSNYVAEQA
ParentalESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLG
ESIDN.LHE.AKRGNLSWLRECLDNRVGVN.LDKAGSTAL..ACHG...D.VEMLFTQ..I.L.QQNKLG
RetrocopyESIDNLLHEVAKRGNLSWLRECLDNRVGVNALDKAGSTALD*ACHGDLRDLVEMLFTQWSI*LSQQNKLG
ParentalDTALHAAAWKGYADIVQLLLAKGARTDLRNNEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA
DTALHAAAWKGYADIVQLLLAKGARTD.RNNEKKLA..MATNA..ASLLKKKQ.TD.VRTLSNA
RetrocopyDTALHAAAWKGYADIVQLLLAKGARTD*RNNEKKLALGMATNAH-ASLLKKKQETDTVRTLSNA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide