Parental gene:

Mrpl42, ENSRNOG00000042740

Aliases:Mrpl42, Mrps32
Description:28S ribosomal protein L42, mitochondrial [Source:RefSeq peptide;Acc:NP_001100252]
Organism:Rat (Rattus norvegicus)
Coordinates:7:36638837..36661936(-)


>ENSRNOG00000042740
ATGGCGGCAGCAGTGAAATGGGCGGTATCACACAGAACTATCTGGAGGCATTTATTTCCAATCCAAAATGGAGCCATATC
TAGTGCTCGTCACAAATCTACGTATTCTTCCCTTCCAGACGACTACAATTGCAAGGTAGAGCTGGCATTGACGTCTGATG
GCAGGACAATAGTGTGCTACCACCCTTCCGTGGATGTCCCCTACGAACACACCCAACCTATCCCTCATCCAGATCTTCTG
CATAATAACGAGGAAACACACGAGCAGATACTGAGAACCAAGTTAGAAGGAAATCGCAAGCATCTTGAGCAAGGGCCCAT
GATAGAACAACTCAGCAAGGTGTTCTTCACCACAAAGCATCGCTGGTACCCACACGGACAGTATCACAGACGCCGTAAGA
AACTGAACCCTCCCAAAGACAGGTGA

Library Parental gene expression (RPM)
SRP017611_liver 10 .89 RPM
SRP017611_kidney 17 .31 RPM
SRP017611_brain 14 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009832 possible_ortholog 1 retrogene
retro_amel_403,
Bos taurus ENSBTAG00000002708 possible_ortholog 3 retrogenes
retro_btau_1395, retro_btau_346, retro_btau_775,
Callithrix jacchus ENSCJAG00000032825 possible_ortholog 4 retrogenes
retro_cjac_1541, retro_cjac_3684, retro_cjac_3966, retro_cjac_722,
Homo sapiens ENSG00000198015 possible_ortholog 3 retrogenes
retro_hsap_3427, retro_hsap_3528, retro_hsap_3844,
Gorilla gorilla ENSGGOG00000022760 possible_ortholog 5 retrogenes
retro_ggor_1983, retro_ggor_2317, retro_ggor_2385, retro_ggor_2483, retro_ggor_2589,
Loxodonta africana ENSLAFG00000013779 possible_ortholog 1 retrogene
retro_lafr_681,
Macaca mulatta ENSMMUG00000016805 possible_ortholog 3 retrogenes
retro_mmul_1751, retro_mmul_1850, retro_mmul_2210,
Mus musculus ENSMUSG00000062981 ortholog_one2many 7 retrogenes
retro_mmus_1432, retro_mmus_1492, retro_mmus_1756, retro_mmus_2140, retro_mmus_656, retro_mmus_721, retro_mmus_722,
Nomascus leucogenys ENSNLEG00000005699 possible_ortholog 5 retrogenes
retro_nleu_1364, retro_nleu_1724, retro_nleu_1979, retro_nleu_493, retro_nleu_606,
Oryctolagus cuniculus ENSOCUG00000010928 possible_ortholog 7 retrogenes
retro_ocun_1321, retro_ocun_1378, retro_ocun_1497, retro_ocun_1716, retro_ocun_1717, retro_ocun_622, retro_ocun_686,
Ochotona princeps ENSOPRG00000010967 possible_ortholog 5 retrogenes
retro_opri_190, retro_opri_51, retro_opri_653, retro_opri_747, retro_opri_997,
Procavia capensis ENSPCAG00000003791 possible_ortholog 1 retrogene
retro_pcap_179,
Pongo abelii ENSPPYG00000004833 possible_ortholog 7 retrogenes
retro_pabe_1286, retro_pabe_2368, retro_pabe_2840, retro_pabe_2914, retro_pabe_3031, retro_pabe_3054, retro_pabe_3552,
Pan troglodytes ENSPTRG00000022791 possible_ortholog 3 retrogenes
retro_ptro_1046, retro_ptro_2327, retro_ptro_2396,
Sus scrofa ENSSSCG00000030478 possible_ortholog 4 retrogenes
retro_sscr_504, retro_sscr_505, retro_sscr_912, retro_sscr_946,
Ictidomys tridecemlineatus ENSSTOG00000026544 possible_ortholog 12 retrogenes
retro_itri_1020, retro_itri_1132, retro_itri_1266, retro_itri_1285, retro_itri_1353, retro_itri_1695, retro_itri_1793, retro_itri_268, retro_itri_284, retro_itri_393, retro_itri_558, retro_itri_899,
Tarsius syrichta ENSTSYG00000006370 possible_ortholog 3 retrogenes
retro_tsyr_1296, retro_tsyr_2113, retro_tsyr_276,
Tursiops truncatus ENSTTRG00000003312 possible_ortholog 2 retrogenes
retro_ttru_1632, retro_ttru_416,
Vicugna pacos ENSVPAG00000007658 possible_ortholog 1 retrogene
retro_vpac_336,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_633 76.39 100.00
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2. retro_rnor_729 50.81 87.23
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3. retro_rnor_920 96.45 100.00
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4. retro_rnor_1383 59.03 100.00
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Download FASTA sequences of all ENSRNOG00000042740 retrocopies