Parental gene: | MRPL42, ENSOCUG00000010928 |
| Aliases: | None |
| Description: | mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 4:72771975..72787906(+) |
>ENSOCUG00000010928
ATGGCGGCAGCAGTAATGAAATGGGTGATATCAAAGAGAACTATCTTGAAACATTTATCTCCAGTCCAAAATGGAGCTTT
ATATTGTGTTTGCCATAAATCTACATATTCTCCTCTTCCAGATGACTATAATTGCAAAGTGGAGCTTGCTTTGACATCGG
ATGGCAGGACAATAGTATGCTATCACCCTTCTGTGGACATTCCATACGAACACACAAAACCTATCCCTCGACCAGATCCT
GTACTTAATAATGAAGAAACACATGATCAAGTGCTGAAAACCAGATTAGAAGAAAAAAGTGAACACCTTGAGCAAGGACC
CATGATAGAACAACTTAGCAAAATGTTCTTTACTACTAAGCACCGTTGGTATCCTCGTGGACAATACTACAATTGCTCTT
CTGATCTAAATGGGCCACCAATGAGA
ATGGCGGCAGCAGTAATGAAATGGGTGATATCAAAGAGAACTATCTTGAAACATTTATCTCCAGTCCAAAATGGAGCTTT
ATATTGTGTTTGCCATAAATCTACATATTCTCCTCTTCCAGATGACTATAATTGCAAAGTGGAGCTTGCTTTGACATCGG
ATGGCAGGACAATAGTATGCTATCACCCTTCTGTGGACATTCCATACGAACACACAAAACCTATCCCTCGACCAGATCCT
GTACTTAATAATGAAGAAACACATGATCAAGTGCTGAAAACCAGATTAGAAGAAAAAAGTGAACACCTTGAGCAAGGACC
CATGATAGAACAACTTAGCAAAATGTTCTTTACTACTAAGCACCGTTGGTATCCTCGTGGACAATACTACAATTGCTCTT
CTGATCTAAATGGGCCACCAATGAGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 5 .78 RPM |
| SRP017611_kidney | 24 .12 RPM |
| SRP017611_brain | 9 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009832 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000002708 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000032825 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000198015 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022760 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000013779 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016805 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005699 | ortholog_one2one | 5 retrogenes | |
| Ochotona princeps | ENSOPRG00000010967 | ortholog_one2one | 5 retrogenes | |
| Procavia capensis | ENSPCAG00000003791 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004833 | ortholog_one2one | 7 retrogenes | |
| Pan troglodytes | ENSPTRG00000022791 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000042740 | possible_ortholog | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000030478 | ortholog_one2one | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000026544 | ortholog_one2many | 12 retrogenes | |
| Tarsius syrichta | ENSTSYG00000006370 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003312 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000007658 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_622 | 66.29 | 61.27 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_686 | 63.91 | 92.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1321 | 60.82 | 66.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_1378 | 62.35 | 57.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1497 | 80.00 | 83.10 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_1716 | 77.27 | 77.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ocun_1717 | 75.34 | 51.41 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000010928 retrocopies