Parental gene: | Hsp90ab1, ENSRNOG00000019834 |
| Aliases: | Hsp90ab1, HSP90-BETA, HSP90B, HSPC2, Hspcb |
| Description: | Heat shock protein HSP 90-beta [Source:UniProtKB/Swiss-Prot;Acc:P34058] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 9:16706485..16712003(+) |
>ENSRNOG00000019834
ATGCCTGAGGAAGTGCACCATGGAGAGGAAGAGGTGGAGACCTTCGCCTTTCAGGCAGAAATTGCCCAGCTGATGTCCCT
CATCATCAACACTTTCTACTCAAACAAAGAGATTTTCCTCCGGGAGTTGATCTCTAATGCTTCTGATGCCCTGGACAAGA
TTCGGTATGAGAGCCTGACTGACCCTTCCAAGTTGGACAGCGGGAAAGAGCTGAAGATTGACATCATCCCCAACCCTCAG
GAACGCACGCTGACTTTGGTGGACACAGGCATTGGCATGACCAAGGCTGACCTCATAAATAACTTGGGAACCATTGCTAA
GTCTGGTACAAAGGCGTTCATGGAGGCTCTCCAGGCTGGTGCAGACATCTCCATGATTGGGCAGTTTGGTGTCGGCTTCT
ACTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGATCACGAAGCACAACGATGATGAGCAGTATGCCTGGGAGTCTTCT
GCTGGTGGATCCTTCACTGTCCGTGCAGACCACGGTGAGCCCATTGGCCGGGGTACCAAAGTGATCCTTCACCTCAAAGA
AGACCAGACAGAGTACTTAGAGGAGAGGAGGGTCAAGGAGGTGGTGAAGAAACACTCACAGTTCATAGGCTACCCCATCA
CCCTCTATCTGGAGAAGGAACGCGAGAAGGAGATCAGTGATGATGAGGCAGAGGAAGAGAAAGGGGAGAAGGAGGAGGAA
GATAAGGAGGATGAGGAGAAGCCTAAGATTGAGGATGTGGGATCTGATGAGGAGGATGACAGCGGCAAAGATAAGAAAAA
GAAAACAAAGAAGATCAAGGAGAAGTACATTGACCAGGAAGAGCTGAATAAGACGAAGCCCATCTGGACCAGAAATCCTG
ATGACATCACTCAAGAGGAATATGGTGAATTCTACAAGAGCCTCACCAATGACTGGGAAGACCACTTGGCAGTCAAGCAC
TTCTCTGTAGAAGGGCAGTTGGAATTCAGGGCATTGCTCTTCATTCCCCGGCGAGCTCCCTTTGACCTCTTTGAGAACAA
GAAGAAGAAGAACAACATCAAATTGTATGTCCGTCGTGTGTTCATCATGGACAGCTGTGATGAGCTGATACCTGAGTACC
TCAACTTCATCCGTGGTGTGGTTGATTCCGAGGACCTGCCTCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAGATC
CTGAAAGTCATCCGCAAAAACATTGTGAAGAAGTGCCTTGAGCTCTTCTCTGAGTTGGCTGAAGACAAAGAGAACTACAA
GAAATTTTATGAGGCATTCTCTAAGAATTTAAAGCTTGGAATCCATGAGGATTCCACTAACCGTCGCCGCCTCTCTGAGC
TCCTTCGCTACCATACCTCTCAGTCTGGAGATGAGATGACTTCCCTGTCAGAGTATGTGTCTCGCATGAAGGAGACACAG
AAGTCCATCTACTATATCACTGGTGAGAGCAAAGAGCAGGTGGCCAACTCTGCCTTCGTGGAGCGTGTGCGGAAACGGGG
CTTTGAGGTGGTATACATGACTGAGCCCATTGATGAGTACTGCGTACAGCAGCTCAAGGAGTTCGATGGCAAGAGCCTGG
TCTCCGTGACCAAGGAGGGCCTGGAGCTACCAGAGGATGAGGAAGAGAAGAAAAAAATGGAGGAGAGCAAGGCAAAGTTT
GAGAATCTCTGCAAGCTCATGAAGGAGATCTTGGACAAGAAGGTTGAAAAAGTGACTATCTCCAATAGGCTTGTGTCTTC
CCCCTGCTGCATTGTGACCAGCACCTACGGCTGGACAGCCAACATGGAACGGATTATGAAGGCCCAGGCACTGCGGGACA
ACTCGACAATGGGCTACATGATGGCCAAGAAACACCTAGAGATCAACCCTGACCACCCCATTGTGGAGACTCTGCGGCAG
AAGGCTGAGGCAGACAAAAACGACAAAGCTGTCAAAGACCTGGTGGTGCTGCTGTTTGAGACTGCTCTGCTCTCCTCTGG
CTTCTCACTTGAGGACCCCCAAACCCACTCCAACCGCATCTACCGCATGATTAAACTAGGCCTGGGCATTGATGAAGATG
AGGTCACTGCAGAAGAGCCCAGTGCTGCTGTTCCCGATGAGATCCCCCCACTGGAGGGTGATGAGGATGCCTCTCGCATG
GAAGAAGTGGATTAA
ATGCCTGAGGAAGTGCACCATGGAGAGGAAGAGGTGGAGACCTTCGCCTTTCAGGCAGAAATTGCCCAGCTGATGTCCCT
CATCATCAACACTTTCTACTCAAACAAAGAGATTTTCCTCCGGGAGTTGATCTCTAATGCTTCTGATGCCCTGGACAAGA
TTCGGTATGAGAGCCTGACTGACCCTTCCAAGTTGGACAGCGGGAAAGAGCTGAAGATTGACATCATCCCCAACCCTCAG
GAACGCACGCTGACTTTGGTGGACACAGGCATTGGCATGACCAAGGCTGACCTCATAAATAACTTGGGAACCATTGCTAA
GTCTGGTACAAAGGCGTTCATGGAGGCTCTCCAGGCTGGTGCAGACATCTCCATGATTGGGCAGTTTGGTGTCGGCTTCT
ACTCTGCCTACCTGGTGGCAGAGAAAGTGGTTGTGATCACGAAGCACAACGATGATGAGCAGTATGCCTGGGAGTCTTCT
GCTGGTGGATCCTTCACTGTCCGTGCAGACCACGGTGAGCCCATTGGCCGGGGTACCAAAGTGATCCTTCACCTCAAAGA
AGACCAGACAGAGTACTTAGAGGAGAGGAGGGTCAAGGAGGTGGTGAAGAAACACTCACAGTTCATAGGCTACCCCATCA
CCCTCTATCTGGAGAAGGAACGCGAGAAGGAGATCAGTGATGATGAGGCAGAGGAAGAGAAAGGGGAGAAGGAGGAGGAA
GATAAGGAGGATGAGGAGAAGCCTAAGATTGAGGATGTGGGATCTGATGAGGAGGATGACAGCGGCAAAGATAAGAAAAA
GAAAACAAAGAAGATCAAGGAGAAGTACATTGACCAGGAAGAGCTGAATAAGACGAAGCCCATCTGGACCAGAAATCCTG
ATGACATCACTCAAGAGGAATATGGTGAATTCTACAAGAGCCTCACCAATGACTGGGAAGACCACTTGGCAGTCAAGCAC
TTCTCTGTAGAAGGGCAGTTGGAATTCAGGGCATTGCTCTTCATTCCCCGGCGAGCTCCCTTTGACCTCTTTGAGAACAA
GAAGAAGAAGAACAACATCAAATTGTATGTCCGTCGTGTGTTCATCATGGACAGCTGTGATGAGCTGATACCTGAGTACC
TCAACTTCATCCGTGGTGTGGTTGATTCCGAGGACCTGCCTCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAGATC
CTGAAAGTCATCCGCAAAAACATTGTGAAGAAGTGCCTTGAGCTCTTCTCTGAGTTGGCTGAAGACAAAGAGAACTACAA
GAAATTTTATGAGGCATTCTCTAAGAATTTAAAGCTTGGAATCCATGAGGATTCCACTAACCGTCGCCGCCTCTCTGAGC
TCCTTCGCTACCATACCTCTCAGTCTGGAGATGAGATGACTTCCCTGTCAGAGTATGTGTCTCGCATGAAGGAGACACAG
AAGTCCATCTACTATATCACTGGTGAGAGCAAAGAGCAGGTGGCCAACTCTGCCTTCGTGGAGCGTGTGCGGAAACGGGG
CTTTGAGGTGGTATACATGACTGAGCCCATTGATGAGTACTGCGTACAGCAGCTCAAGGAGTTCGATGGCAAGAGCCTGG
TCTCCGTGACCAAGGAGGGCCTGGAGCTACCAGAGGATGAGGAAGAGAAGAAAAAAATGGAGGAGAGCAAGGCAAAGTTT
GAGAATCTCTGCAAGCTCATGAAGGAGATCTTGGACAAGAAGGTTGAAAAAGTGACTATCTCCAATAGGCTTGTGTCTTC
CCCCTGCTGCATTGTGACCAGCACCTACGGCTGGACAGCCAACATGGAACGGATTATGAAGGCCCAGGCACTGCGGGACA
ACTCGACAATGGGCTACATGATGGCCAAGAAACACCTAGAGATCAACCCTGACCACCCCATTGTGGAGACTCTGCGGCAG
AAGGCTGAGGCAGACAAAAACGACAAAGCTGTCAAAGACCTGGTGGTGCTGCTGTTTGAGACTGCTCTGCTCTCCTCTGG
CTTCTCACTTGAGGACCCCCAAACCCACTCCAACCGCATCTACCGCATGATTAAACTAGGCCTGGGCATTGATGAAGATG
AGGTCACTGCAGAAGAGCCCAGTGCTGCTGTTCCCGATGAGATCCCCCCACTGGAGGGTGATGAGGATGCCTCTCGCATG
GAAGAAGTGGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 517 .80 RPM |
| SRP017611_kidney | 937 .38 RPM |
| SRP017611_brain | 1259 .12 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000001981 | possible_ortholog | 4 retrogenes | |
| Felis catus | ENSFCAG00000009764 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000096384 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000013735 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005239 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000022686 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000023944 | possible_ortholog | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007219 | within_species_paralog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000006924 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_87 | 99.73 | 50.83 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_597 | 85.05 | 67.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_598 | 84.81 | 60.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_1561 | 87.94 | 59.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_rnor_1562 | 85.95 | 99.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_rnor_1787 | 89.41 | 97.65 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000019834 retrocopies