Parental gene: | SLC29A1, ENSCAFG00000001981 |
| Aliases: | SLC29A1, ENT1 |
| Description: | Canis lupus familiaris solute carrier family 29 (nucleoside transporters), member 1 (SLC29A1), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001003367] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 12:12638121..12664676(+) |
>ENSCAFG00000001981
ATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACTTTTGCCTTCCAGGCAGAAATTGCCCAGCTCATGTCCCT
CATCATCAATACCTTCTATTCTAACAAGGAAATTTTTCTTCGAGAGTTGATCAGTAATGCTTCTGATGCCTTGGACAAGA
TTCGCTATGAAAGCCTGACAGACCCTTCCAAGTTGGACAGTGGTAAAGAGCTGAAAATTGACATCATCCCTAACCCCCAG
GAACGCACCCTGACTCTGGTGGACACAGGCATTGGTATGACCAAAGCTGATCTCATAAATAACTTGGGAACCATTGCCAA
GTCTGGCACTAAAGCATTCATGGAGGCCCTTCAGGCTGGTGCAGACATCTCCATGATTGGACAGTTTGGTGTTGGCTTTT
ATTCTGCTTATCTGGTGGCAGAGAAAGTGGTTGTTATCACAAAGCACAATGATGATGAGCAGTATGCGTGGGAGTCTTCT
GCTGGGGGCTCTTTCACTGTACGTGCAGACCATGGTGAGCCCATTGGCCGGGGTACCAAAGTGATCCTCCATCTTAAAGA
AGACCAAACCGAATATTTAGAGGAGAGACGTGTCAAAGAAGTGGTGAAGAAGCACTCCCAGTTCATAGGTTATCCCATCA
CTCTTTATTTGGAGAAGGAACGAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAGGAGAAAGGGGAGAAAGAGGAAGAA
GATAAAGATGATGAGGAAAAACCCAAAATTGAAGATGTGGGTTCAGATGAGGAGGATGATAGTGGGAAGGACAAGAAAAA
AAAGACCAAGAAGATTAAGGAAAAATACATTGATCAAGAAGAACTGAACAAGACCAAGCCCATTTGGACCAGAAACCCTG
ATGACATCACCCAGGAGGAATATGGAGAGTTTTACAAGAGCCTTACTAATGACTGGGAAGATCACCTGGCAGTCAAGCAC
TTCTCTGTAGAAGGTCAGCTGGAATTCAGGGCATTGCTGTTCATCCCTCGTCGGGCTCCTTTTGACCTCTTTGAGAACAA
GAAGAAAAAGAACAATATCAAACTGTATGTCCGCCGTGTGTTTATCATGGACAGCTGTGATGAATTGATACCAGAGTATC
TCAACTTCATCCGTGGTGTGGTTGACTCCGAGGACCTGCCCCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAAATC
TTGAAGGTCATTCGCAAAAATATTGTGAAGAAGTGCCTTGAGCTCTTCTCTGAATTGGCAGAAGACAAGGAGAACTATAA
GAAATTCTATGAGGCATTCTCTAAAAACCTAAAGCTTGGAATCCATGAAGATTCCACTAACCGGCGCCGCCTTTCTGAGC
TGCTGCGTTACCACACTTCCCAATCTGGAGATGAGATGACTTCTCTTTCAGAGTATGTGTCCCGTATGAAGGAGACTCAG
AAATCCATCTATTACATCACTGGTGAGAGCAAAGAGCAGGTTGCCAACTCCGCTTTTGTGGAGCGAGTGCGGAAACGGGG
CTTCGAGGTAGTGTATATGACAGAGCCTATCGACGAGTACTGCGTGCAACAGCTCAAGGAGTTTGATGGGAAGAGTCTGG
TCTCAGTTACCAAGGAGGGCCTGGAGTTGCCTGAGGATGAAGAGGAGAAGAAGAAAATGGAGGAGAGCAAGGCCAAGTTC
GAGAATCTCTGCAAACTCATGAAGGAAATCTTGGATAAGAAGGTTGAAAAGGTGACCATCTCTAACAGGCTGGTATCTTC
ACCCTGCTGCATCGTGACTAGCACTTATGGCTGGACTGCCAACATGGAGCGGATCATGAAAGCCCAGGCACTCCGGGACA
ACTCTACAATGGGCTATATGATGGCCAAAAAGCATCTGGAGATCAACCCTGACCACCCCATTGTGGAGACGCTGCGGCAG
AAGGCAGAGGCAGATAAGAACGACAAGGCTGTCAAGGACCTGGTGGTGCTACTGTTTGAAACAGCTCTACTCTCCTCCGG
CTTCTCACTGGAGGATCCCCAGACTCACTCCAACCGCATTTACCGCATGATCAAGCTAGGCCTGGGCATCGATGAAGATG
AAGTGGCAGCGGAGGAACCCAGTGCTGCTGTTCCTGATGAGATCCCTCCACTTGAGGGTGATGAGGATGCCTCTCGCATG
GAAGAAGTCGATTAA
ATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACTTTTGCCTTCCAGGCAGAAATTGCCCAGCTCATGTCCCT
CATCATCAATACCTTCTATTCTAACAAGGAAATTTTTCTTCGAGAGTTGATCAGTAATGCTTCTGATGCCTTGGACAAGA
TTCGCTATGAAAGCCTGACAGACCCTTCCAAGTTGGACAGTGGTAAAGAGCTGAAAATTGACATCATCCCTAACCCCCAG
GAACGCACCCTGACTCTGGTGGACACAGGCATTGGTATGACCAAAGCTGATCTCATAAATAACTTGGGAACCATTGCCAA
GTCTGGCACTAAAGCATTCATGGAGGCCCTTCAGGCTGGTGCAGACATCTCCATGATTGGACAGTTTGGTGTTGGCTTTT
ATTCTGCTTATCTGGTGGCAGAGAAAGTGGTTGTTATCACAAAGCACAATGATGATGAGCAGTATGCGTGGGAGTCTTCT
GCTGGGGGCTCTTTCACTGTACGTGCAGACCATGGTGAGCCCATTGGCCGGGGTACCAAAGTGATCCTCCATCTTAAAGA
AGACCAAACCGAATATTTAGAGGAGAGACGTGTCAAAGAAGTGGTGAAGAAGCACTCCCAGTTCATAGGTTATCCCATCA
CTCTTTATTTGGAGAAGGAACGAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAGGAGAAAGGGGAGAAAGAGGAAGAA
GATAAAGATGATGAGGAAAAACCCAAAATTGAAGATGTGGGTTCAGATGAGGAGGATGATAGTGGGAAGGACAAGAAAAA
AAAGACCAAGAAGATTAAGGAAAAATACATTGATCAAGAAGAACTGAACAAGACCAAGCCCATTTGGACCAGAAACCCTG
ATGACATCACCCAGGAGGAATATGGAGAGTTTTACAAGAGCCTTACTAATGACTGGGAAGATCACCTGGCAGTCAAGCAC
TTCTCTGTAGAAGGTCAGCTGGAATTCAGGGCATTGCTGTTCATCCCTCGTCGGGCTCCTTTTGACCTCTTTGAGAACAA
GAAGAAAAAGAACAATATCAAACTGTATGTCCGCCGTGTGTTTATCATGGACAGCTGTGATGAATTGATACCAGAGTATC
TCAACTTCATCCGTGGTGTGGTTGACTCCGAGGACCTGCCCCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAAATC
TTGAAGGTCATTCGCAAAAATATTGTGAAGAAGTGCCTTGAGCTCTTCTCTGAATTGGCAGAAGACAAGGAGAACTATAA
GAAATTCTATGAGGCATTCTCTAAAAACCTAAAGCTTGGAATCCATGAAGATTCCACTAACCGGCGCCGCCTTTCTGAGC
TGCTGCGTTACCACACTTCCCAATCTGGAGATGAGATGACTTCTCTTTCAGAGTATGTGTCCCGTATGAAGGAGACTCAG
AAATCCATCTATTACATCACTGGTGAGAGCAAAGAGCAGGTTGCCAACTCCGCTTTTGTGGAGCGAGTGCGGAAACGGGG
CTTCGAGGTAGTGTATATGACAGAGCCTATCGACGAGTACTGCGTGCAACAGCTCAAGGAGTTTGATGGGAAGAGTCTGG
TCTCAGTTACCAAGGAGGGCCTGGAGTTGCCTGAGGATGAAGAGGAGAAGAAGAAAATGGAGGAGAGCAAGGCCAAGTTC
GAGAATCTCTGCAAACTCATGAAGGAAATCTTGGATAAGAAGGTTGAAAAGGTGACCATCTCTAACAGGCTGGTATCTTC
ACCCTGCTGCATCGTGACTAGCACTTATGGCTGGACTGCCAACATGGAGCGGATCATGAAAGCCCAGGCACTCCGGGACA
ACTCTACAATGGGCTATATGATGGCCAAAAAGCATCTGGAGATCAACCCTGACCACCCCATTGTGGAGACGCTGCGGCAG
AAGGCAGAGGCAGATAAGAACGACAAGGCTGTCAAGGACCTGGTGGTGCTACTGTTTGAAACAGCTCTACTCTCCTCCGG
CTTCTCACTGGAGGATCCCCAGACTCACTCCAACCGCATTTACCGCATGATCAAGCTAGGCCTGGGCATCGATGAAGATG
AAGTGGCAGCGGAGGAACCCAGTGCTGCTGTTCCTGATGAGATCCCTCCACTTGAGGGTGATGAGGATGCCTCTCGCATG
GAAGAAGTCGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 591 .71 RPM |
| SRP017611_kidney | 601 .80 RPM |
| SRP017611_liver | 460 .46 RPM |
| SRP012049_cerebellum | 792 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018036 | within_species_paralog | 1 retrogene | |
| Felis catus | ENSFCAG00000009764 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000008889 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000013735 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005239 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000022686 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000023944 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000011961 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016655 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000019834 | possible_ortholog | 6 retrogenes | |
| Tupaia belangeri | ENSTBEG00000014873 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_411 | 90.42 | 58.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_562 | 88.86 | 61.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_881 | 90.78 | 77.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1108 | 76.46 | 51.38 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000001981 retrocopies