RetrogeneDB ID: retro_mluc_1604

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429871:616000..617262(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HSP90AB1
• Ensembl ID: ENSMLUG00000005239
• Aliases: None
• Description: None

Sequence

>retro_mluc_1604
ATGCCTGAGGAAATGCATTATGGGGAGGAGGAGGCAGAGACTTGCACTTTCCAGGCAGAAATTGCCTAACTCATGTCTCT
CATTACCAGTACTTTTTACTCCAACTGGGAAATTTTCCTTTGGGATTGATTAGTAATGCTTCTGATGCCTTGGACAAGAT
ATACTATGAGAGCCTGACTGCCACTTCCAAGTTGGACAGTGGTAAAGAGCTGAAAATTTACATCATCTGCAAACCCCAGG
AATTCACACTCACTTTGGTGGACACAGACATTGGCATAGCCAAAGCTGATCTTATAAATCATCTGGGAACCATTGCCAAG
TCTGGAACAAAAGCATTTATAGAGGCTCTTCAGGCTGGTGCAGACATCTCCATTACTGGAGAGTTTGGTGTTGGCTTTTG
TTCTGCCTACCTGATGGTGGAGAAAGTGGTTGTGTTCACAAAGCACAATGATGATGAGCAGTATGCCTGGGAGTCCTCTG
CTGAGGGTTCCTTCACTGTGGGAGCTGACTATGGTCTGGGTACCAAAGTAATCTTCCACCTTAAAGATGACATGACAGAG
TAGTTAGAGGGAGGGAGGTCAAAGAATTGGTGCAGAAGCACTCACAGTTTATAGGTAATACCATCAACCCTTTATTTGAA
GAAGGAATGAGAGAAAGAAATCAATGATGAAGCAGAGGAAGAGAAAGGGGAGAAAGATGCGGAAGATAAAGATGATGAGG
AGAAACCCAAGTTTGAAGACATGGGTTCAGATGAGGAGGATGATAGTGCTAAGGATAACAAAAAGAAAACAAAGAAGATT
AAGGAAAACTATATCCATCAGGAAGAACTGAACAAGACCAAGCCCATTTTGGACCCTGGTGACATCACTCAGGAAGAACA
TGGAGAGTTCTATAAGAGCCTTGCCAATGACTGGGAAGACCACTTGGCAGTCAAGCACTTCTCTGTAGAAGGTCAGTCGG
AATTCAGGGCATTGCTATTCATCCCCTGAGGGGCTCCTTTTGACCGCTTTGAGACCAAGATGAAGAATCAAACACATCAA
ACTCTGTCTGCCATGTGTTCATCATGGACAGCTGTGATGAGTTGATACCAAAGTATCTCAATTTCTTCCATGGTGTGGTT
GACTCTGAGGACCTCCTCATGAACATCTCCCAAGAATTGCTCCAGCAGAGCAAAATTTAGAAGGTCATTTCAAAAGACAT
TGTTGAAGTGACTTGAGCTCTTCTCTCAGCTGACAGAAGACAAGGATAATTATAAGAAATTC

Alignment

ORF - retro_mluc_1604 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.86 %
• Parental protein coverage: 59.31 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MPEEVVHHGEEDVETFAFQAEIAQLMSLIINTFYSNKEIFLRE-LISNASDALDKIRYESLTDPSKLDSG
          MPEE..H.GEE..ET..FQAEIA.LMSLI..TFYSN.EIFL...LISNASDALDKI.YESLT..SKLDSG
Retrocopy MPEEM-HYGEEEAETCTFQAEIA*LMSLITSTFYSNWEIFLWD<LISNASDALDKIYYESLTATSKLDSG

Parental  KELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL
          KELKI.II..PQE.TLTLVDT.IG..KADLIN.LGTIAKSGTKAF.EALQAGADIS..G.FGVGF.SAYL
Retrocopy KELKIYIICKPQEFTLTLVDTDIGIAKADLINHLGTIAKSGTKAFIEALQAGADISITGEFGVGFCSAYL

Parental  VAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEE-RRVKEVVKKHSQ
          ..EKVVV.TKHNDDEQYAWESSA.GSFTV.AD.....G.GTKVI.HLK.D.TE.LE..R.VKE.V.KHSQ
Retrocopy MVEKVVVFTKHNDDEQYAWESSAEGSFTVGADY----GLGTKVIFHLKDDMTE*LEG<REVKELVQKHSQ

Parental  FIG-YPITLYLEKEREKEISDDEAEEEKGEKEEEDKDDEEKPKIEDVGSDEEDDSAKDKKKKTKKIKEKY
          FIG..P.TLYL.KE.EKEI.D.EAEEEKGEK..EDKDDEEKPK.ED.GSDEEDDSAKD.KKKTKKIKE.Y
Retrocopy FIG>IPSTLYLKKE*EKEIND-EAEEEKGEKDAEDKDDEEKPKFEDMGSDEEDDSAKDNKKKTKKIKENY

Parental  IDHEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN
          I..EELNKTKPI....P.DITQEE.GEFYKSL.NDWEDHLAVKHFSVEGQ.EFRALLFIP..APFD.FE.
Retrocopy IHQEELNKTKPIL--DPGDITQEEHGEFYKSLANDWEDHLAVKHFSVEGQSEFRALLFIP*GAPFDRFET

Parental  KKK-KNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVI-RKNIVKKCLE
          K.K...N....V..VFIMDSCDELIP.YLNF..GVVDSEDL..NIS.E.LQQSKI.KVI..K...K..LE
Retrocopy KMK<ESNTSNSVCHVFIMDSCDELIPKYLNFFHGVVDSEDLLMNISQELLQQSKI*KVI>QKTLLK*-LE

Parental  LFSELAEDKENYKKF
          LFS.L.EDK.NYKKF
Retrocopy LFSQLTEDKDNYKKF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1604 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 32 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001981	4 retrocopies	retro_cfam_1108, retro_cfam_411, retro_cfam_562, retro_cfam_881,
Felis catus	ENSFCAG00000009764	1 retrocopy	retro_fcat_1177,
Homo sapiens	ENSG00000096384	2 retrocopies	retro_hsap_2912, retro_hsap_2958,
Gorilla gorilla	ENSGGOG00000008889	2 retrocopies	retro_ggor_1011, retro_ggor_701,
Macropus eugenii	ENSMEUG00000013735	1 retrocopy	retro_meug_1896,
Myotis lucifugus	ENSMLUG00000005239	2 retrocopies	retro_mluc_1604 , retro_mluc_865,
Macaca mulatta	ENSMMUG00000022686	2 retrocopies	retro_mmul_1319, retro_mmul_1869,
Mus musculus	ENSMUSG00000023944	3 retrocopies	retro_mmus_1916, retro_mmus_3528, retro_mmus_856,
Otolemur garnettii	ENSOGAG00000011961	1 retrocopy	retro_ogar_2574,
Pongo abelii	ENSPPYG00000016655	2 retrocopies	retro_pabe_2425, retro_pabe_415,
Pan troglodytes	ENSPTRG00000018217	4 retrocopies	retro_ptro_1850, retro_ptro_1968, retro_ptro_2003, retro_ptro_880,
Rattus norvegicus	ENSRNOG00000019834	6 retrocopies	retro_rnor_1561, retro_rnor_1562, retro_rnor_1787, retro_rnor_597, retro_rnor_598, retro_rnor_87,
Tupaia belangeri	ENSTBEG00000014873	1 retrocopy	retro_tbel_1428,
Tursiops truncatus	ENSTTRG00000006924	1 retrocopy	retro_ttru_292,